LOCUS BC049522 757 bp mRNA linear VRT 26-JUN-2007
DEFINITION Danio rerio signal recognition particle 9, mRNA (cDNA clone
MGC:56668 IMAGE:5916501), complete cds.
ACCESSION BC049522
VERSION BC049522.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 757)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 757)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 104 Row: n Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29436533.
FEATURES Location/Qualifiers
source 1..757
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:56668 IMAGE:5916501"
/tissue_type="Whole body, adult male"
/clone_lib="Sugano SJD adult male"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..757
/gene="srp9"
/gene_synonym="zgc:56668"
/db_xref="GeneID:394071"
/db_xref="ZFIN:ZDB-GENE-040426-1106"
CDS 97..357
/gene="srp9"
/gene_synonym="zgc:56668"
/codon_start=1
/product="signal recognition particle 9"
/protein_id="AAH49522.1"
/db_xref="GeneID:394071"
/db_xref="ZFIN:ZDB-GENE-040426-1106"
/translation="MPYYQTWEEFARAAEKLYLTDPMKVRVVLKYRHCDGNLCMKVTD
DAVCLQYKTDQAQDVKKVEKLHGKLMRLMVSKETHSGSMETD"
BASE COUNT 246 a 116 c 164 g 231 t
ORIGIN
1 atattttacg ccacctgggt tttgcttcaa acagctgtaa tttccttcgc cgttaaagta
61 ttattcaaat acattatata cagagtttac taaaccatgc cttattatca aacatgggaa
121 gagtttgcgc gagctgccga aaaactttac ttgacggacc caatgaaggt cagagtggtg
181 ctgaaataca gacactgtga tggaaatctc tgtatgaagg tcacagatga tgctgtttgt
241 ttacagtaca agactgacca ggcccaagat gtgaagaagg ttgagaaact gcatgggaaa
301 ctgatgagat taatggtctc caaagagact cacagtgggt caatggaaac agactgaagt
361 cgtcaaatga aacttggaat tggacagttg tttttgactc ggtctgactg acaatgaaga
421 gagactgatt tctaggagga tcgagaagac gtttggttga tgtttttttg actgatgtcc
481 atatgctcat gtggagagca agcagcaaga gcatcttaca aggggctgat atttgtgtta
541 ttctgaaagt tggacaacgt tgtaatggtc atactgttgt tttcatttgg tctgcctatt
601 atttaatgtt tggaggatgt agatttttaa ctgcaacatc aagggatgaa tttcataagt
661 ctgtattttg tatatctaag cctgatgtac actaatcctt aataaattta attttttttc
721 ttcccaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//