LOCUS BC049388 3951 bp mRNA linear HUM 26-JUN-2007 DEFINITION Homo sapiens family with sequence similarity 78, member A, mRNA (cDNA clone MGC:50920 IMAGE:6050655), complete cds. ACCESSION BC049388 VERSION BC049388.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3951) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3951) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC049388.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 89 Row: n Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 34222124. FEATURES Location/Qualifiers source 1..3951 /db_xref="H-InvDB:HIT000053373" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:50920 IMAGE:6050655" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3951 /gene="FAM78A" /gene_synonym="RP11-544A12.6" /db_xref="GeneID:286336" /db_xref="HGNC:HGNC:25465" CDS 401..1192 /gene="FAM78A" /gene_synonym="RP11-544A12.6" /codon_start=1 /product="FAM78A protein" /protein_id="AAH49388.1" /db_xref="GeneID:286336" /db_xref="HGNC:HGNC:25465" /translation="MGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRY RTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQ AISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQD QPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR" BASE COUNT 853 a 1195 c 1079 g 824 t ORIGIN 1 cgcctgcttc ctccgaagac ttcagggaga gtctgcgagc tgccgtcccc gcgtgtgagg 61 cacagaaggg ctggatgtca gaaccgcata attattcatt aaactacaaa ctttttttaa 121 cccaaagaat atcggtgatt tttgtccact gcgaggagaa gaagagagag cccagggctc 181 atgaaatgca gcagaatcct tatttataaa caggccgcgg tagtgatata tgcaacccca 241 gtctactcag tgagttttct atcctatgga tatcggtctt gagagttgag attggagagc 301 agcgccgtct gtactgggtc ctgcagcctc tgtcctttca atgcctggtt ttttctgtga 361 ctgctggcct tccctggaga tcagagcgct cctgtatgcc atgggctgta ttcagagcat 421 cggaggcaaa gccagagtct tccgggaagg gatcacggtg attgatgtga aagcctccat 481 cgaccccgtc cccactagca tcgatgagtc ctccagcgtg gtgctccgct accggacacc 541 ccacttccgg gcctcggccc aggtggtcat gccgcccatc cccaagaagg agacttgggt 601 agttggctgg atccaggcgt gcagccacat ggagttctac aaccagtacg gcgagcaggg 661 catgtccagc tgggagctcc ccgacctcca ggagggcaag atccaagcca tcagcgactc 721 ggacggggtg aactacccct ggtacggcaa caccacagag acctgcacca tcgtgggccc 781 caccaagagg gactccaagt tcatcatcag catgaatgac aacttctacc ccagcgtcac 841 atgggccgtg cccgtcagcg agagcaacgt ggccaagctc accaacatct accgggacca 901 gagcttcacc acctggctgg tggccaccaa cacctccacc aacgacatga tcatcctgca 961 gacgctgcac tggcgcatgc agctcagcat cgaggtgaac cccaaccggc ccctgggcca 1021 gcgcgcccgg ctgcgggagc ccatcgccca ggaccagccc aaaatcctga gcaagaatga 1081 gcccatcccg cccagcgccc tggtcaagcc caatgccaac gatgcccagg tcctcatgtg 1141 gcggcccaag tacgggcagc cgctggtggt gatcccgccc aagcaccggt gacagccagg 1201 accacccgct aggttagact cacaaataat aataccgctg aaaacaaaac tcagactcac 1261 tcttcagtca ttcagcaaga tacaaccatt ctaccctctc cagcgggcgg atctcactgt 1321 gctgatgccc ccgggaaggc ctccccggct ctcggcacct gcttcctttc agggagaggg 1381 gagatctaag caggacagac agaccccacg tgcgccctca gggtgacctc tggtctcctt 1441 gcctctcctt tttctcagtt tcagtcgctc acttgtaaca gattccctga aacactgctt 1501 tttccgtttt ttaaaaaaac tcctcttttg ggggctcagg ggcaggagga gggggagctg 1561 attaggaggg aagctccagc ccccgatcaa agagacagat ccacactgct gccgatttgt 1621 ggcgctggcc ggccttcccc ccaggtccct ccgccctctg tcatgcggcc ttatgtagac 1681 ttgctttgcc aaacttttgc cttaagctga attgaaagga agaaaaccaa tcggagaaag 1741 aaagcaggat ctcttttcta ccggactttt cctcttctgc cagaggtgga gggagggttg 1801 gggtcgcccg cgagagtctc ttgagccctt cttcccggtt gtcttgggag aagggtgagg 1861 atgggcattt agacccgaaa ccagctgctc actctttctt tttggcagaa ataaaaccac 1921 aggtagattc tgcctgaaca gccccttctc tccctccacc cccaggtcgt atccctgcac 1981 ctgcggagag gggctgtgag ctctggcggg gggtggctcc accagtcgcc tggcctcttc 2041 tcccctctct tcccagcagc cttaacttcc cttgggcggc tctaggagga gagaggcagg 2101 ctcctgtgag cccagggaat tttcaccctc tcagtcctca ggacccaccc ccagttgagt 2161 ccctggccct tcctccaggt gtgtggcttt ttccttctcc atccacactg gtcccaaatg 2221 cctgggggcc ggccacctgg accgccgaca cacagcctca atgttagtct caaaggtaag 2281 gaaggcattc acgtcccttc ttgcagggca ttttaagact tgaatcgggt gggccccggc 2341 ccctgtggct ggctggcccc tggtgtactg taaaagggcc aagacagggc tcgttctcag 2401 gggcgcccct cccaggccct cagggcagcg ggacggtgca gtcaggctct gggtgccaca 2461 gtgatggagg tggaaggcac ccaagctcta gggaagtctt gggaggcagt cggccgagcc 2521 cctgcttcct gtcctcaaat aagtgaatcc aggccaaggg ctgggagggc tgggtgggct 2581 tatcgtcgag agggttcaga gccactctgg aggctgggct ggcacagtgg agagcgacag 2641 gtgaggacag acgtctggaa gcccatccct gggacctgcc ctcccttggt cccaggtcac 2701 tggagctcca gggcttactt agtcctgacc cattgtgcca gggttctgag cagtgtcggc 2761 cttgtggcca cttgcagggg ctattagggg acatcccgct gaagccacgc tccttccagc 2821 ttgccaaacc cacagctacc cgcccgggac ccacactcag cctaataatt atcaagcaca 2881 gaaaaccgtc catttagaaa aataatccat ttctgctgca gatgagccac ttgtaagagt 2941 ctccgtgaca gcgtgggacg gtgtgggaac caaagtccct gccctgctcc tttgtccacg 3001 ggctattgcg tttattcaag gggtgcttaa tgaccgttta gccactgccg tcggtctccg 3061 ggcccagctc gtgccaggag gctgtcctgg gacacactgg gctggagctg ccggctggca 3121 cggtgctcag ggggcccctg atgggggcca ggacctcccc gcagaaactg caggttctct 3181 tgtgaggatg gaggccgtgc caccccgaaa ggcagtagcc ttaggggaac agtgggtccc 3241 agctgcatgt ctgaggatgg gtggggacag ggctgggact cagctttcat tcactggaga 3301 cttctccact caggtctttg ttgcactaaa gcagggacag gaccctgggg gttcaggaag 3361 cgggtctcag gccgctggtt tattcctgga ggtggggctg gagaccagaa tggaaagggg 3421 cttcctgagc tgctaggggg tgaaggaccc ccgaacccgc atttcttgag tgagagcaaa 3481 cactcgaggc aggagccagc acccctccca ctgcatgccc ggcccccagc ccaccttgcc 3541 ccctgaccca ccttcacccg tgccccttct ttctgccctt cctcaccgaa gaagggctag 3601 gaacaccctg gagaggctgc aggtccggcc acggacgctc agctgagccc cggtctgctc 3661 cttcagcctc cttgctcttg ttggagcaca ggccccaggc ttcctgccag ggccccgatt 3721 cttcttatgt cctccagccc cgccctggcg tggacatcca ctcactcctt ccagcaataa 3781 gaaccgtcct tggtcgtgga gagtactgtg aaacaaacca atgcacttac caggaggcac 3841 aagactcttg aagaagatgt aaaatgaacc tttttttttt ttacaaaaaa caaaaagcaa 3901 atattcataa agagaaataa aatgtaattt taaagtaaaa aaaaaaaaaa a //