LOCUS BC048974 2808 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens zinc finger protein 23 (KOX 16), mRNA (cDNA clone
MGC:57283 IMAGE:4816965), complete cds.
ACCESSION BC048974
VERSION BC048974.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2808)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2808)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: c Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23308736.
FEATURES Location/Qualifiers
source 1..2808
/db_xref="H-InvDB:HIT000099031"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57283 IMAGE:4816965"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2808
/gene="ZNF23"
/gene_synonym="KOX16"
/gene_synonym="Zfp612"
/gene_synonym="ZNF612"
/db_xref="GeneID:7571"
/db_xref="HGNC:HGNC:13023"
/db_xref="MIM:194527"
CDS 545..2302
/gene="ZNF23"
/gene_synonym="KOX16"
/gene_synonym="Zfp612"
/gene_synonym="ZNF612"
/codon_start=1
/product="ZNF23 protein"
/protein_id="AAH48974.1"
/db_xref="GeneID:7571"
/db_xref="HGNC:HGNC:13023"
/db_xref="MIM:194527"
/translation="MYEGKENVSFELQRDFSQETDFSEASLLEKQQEVHSAGNIKKEK
SNTIDGTVKDETSPVEECFFSQSSNSYQCHTITGEQPSGCTGLGKSISFDTKLVKHEI
INSEERPFKCEELVEPFRCDSQLIQHQENNTEEKPYQCSECGKAFSINEKLIWHQRLH
SGEKPFKCVECGKSFSYSSHYITHQTIHSGEKPYQCKMCGKAFSVNGSLSRHQRIHTG
EKPYQCKECGNGFSCSSAYITHQRVHTGEKPYECNDCGKAFNVNAKLIQHQRIHTGEK
PYECNECGKGFRCSSQLRQHQSIHTGEKPYQCKECGKGFNNNTKLIQHQRIHTGEKPY
ECTECGKAFSVKGKLIQHQRIHTGEKPYECNECGKAFRCNSQFRQHLRIHTGEKPYEC
NECGKAFSVNGKLMRHQRIHTGEKPFECNECGRCFTSKRNLLDHHRIHTGEKPYQCKE
CGKAFSINAKLTRHQRIHTGEKPFKCMECEKAFSCSSNYIVHQRIHTGEKPFQCKECG
KAFHVNAHLIRHQRSHTGEKPFRCVECGKGFSFSSDYIIHQTVHTWKKPYMCSVCGKA
FRFSFQLSQHQSVHSEGKS"
BASE COUNT 926 a 550 c 666 g 666 t
ORIGIN
1 cacttccggc agcgccgggg agcagtccgc tacggagctc cagcccttct ctgagacggg
61 gaccagggga tggcagccat gcacctgaca gcctggcccc agggacttca cggatcccct
121 gaagctcatc catggacttc catggactac agaagtcggt gacctttgag gacgtggctg
181 tgtacttcac ccaggcggaa tgggatggcc tgtcccctgc acagaggacc ctgtacaggg
241 atgtgatgct ggagaattat gggaatgtgg cctccctggg atttccactt ctcaaacctg
301 ctgtgatctc acaactggag ggaggaggtg agctgggggg ctcatctcca ctggctgcag
361 gaacaggcct ccagggcctc cagactgatg gagtctcgct ctgtcgccca aactggagtg
421 cagtggcaag aacttggctc accgcaactt ccgtttcccg ggttcgagca attctcctgc
481 ctcatcctcc cgagtagctg gaactacagt agatattcag actgacaatg atttgacaaa
541 ggaaatgtat gaaggaaaag agaatgtatc atttgaactt caaagagact tttcccagga
601 aacagacttt tcagaagcct ctcttctaga gaaacaacag gaagtccact cagcaggaaa
661 tataaagaag gagaagagca acaccattga tggaacagtg aaagatgaga caagccccgt
721 ggaggagtgt ttttttagtc aaagttcaaa ctcatatcag tgtcatacca tcactggaga
781 gcagccctct gggtgtacag gattggggaa atccatcagc tttgatacaa aactcgtgaa
841 gcatgaaata attaattctg aggaaagacc tttcaaatgt gaagaattag tagagccctt
901 taggtgtgac tctcaactta ttcaacatca agagaacaac actgaggaaa agccttatca
961 gtgttcggag tgtggcaaag ctttcagcat taatgagaaa ttaatttggc atcagagact
1021 tcacagtggg gagaaaccct tcaaatgtgt ggagtgtggg aaaagcttca gctacagttc
1081 ccattatatc acacatcaga caatccacag tggggagaag ccctatcagt gtaagatgtg
1141 tgggaaggcc ttcagtgtta atggaagcct aagtaggcat cagagaatcc atacgggaga
1201 gaagccctat cagtgcaagg aatgtggaaa tggcttcagc tgtagttctg catatattac
1261 acatcagaga gtccacactg gagagaaacc ttacgagtgt aatgactgtg ggaaagcgtt
1321 caatgttaat gcaaaattaa ttcaacatca gagaatccat actggagaga aaccttatga
1381 atgtaatgaa tgtggaaaag gcttcaggtg cagctcccag cttaggcagc atcagagcat
1441 ccacacagga gaaaagccct atcagtgtaa agagtgtgga aaaggcttca ataataatac
1501 aaaactcatt cagcatcaga gaatccacac aggtgagaaa ccctatgaat gcactgaatg
1561 tggaaaagcc ttcagtgtca aagggaagtt aatccaacac cagagaattc acacaggcga
1621 gaaaccctat gagtgtaatg aatgcgggaa agccttcaga tgtaactccc aatttcggca
1681 gcatctgaga attcacactg gggagaagcc ctatgagtgt aatgagtgtg gaaaggcctt
1741 cagcgttaat gggaaactaa tgcggcatca gagaattcac actggggaga aaccttttga
1801 atgtaatgag tgtgggagat gctttacttc taaaagaaac ctacttgatc atcaccgaat
1861 ccatactgga gaaaagccct atcaatgtaa ggaatgtggg aaagccttca gtatcaatgc
1921 caaactaact aggcatcaga ggatacatac tggggagaaa cctttcaaat gtatggaatg
1981 tgagaaagca ttcagctgta gttctaacta tattgtgcac cagagaatcc atacaggaga
2041 gaaacccttt cagtgtaagg agtgtggaaa agccttccat gttaatgccc atttaattcg
2101 gcatcagaga agccacactg gggagaaacc cttcagatgt gtggaatgtg gcaaaggctt
2161 cagctttagt tctgactaca ttatacatca gacagtccac acttggaaga aaccctatat
2221 gtgtagtgtg tgtgggaaag cattcaggtt tagcttccag ctcagtcagc atcagagtgt
2281 ccatagtgaa ggaaaatcct aataatgaga aagatataga aaactcttaa ggttaatgcc
2341 aaaatggatc aagtatcatc agattcatcc attgaaaaac ctccaagagg gcatgaatat
2401 ggcagagtct tcatatggaa acagttttta ttctattcag tttaaatcag gaaaggatga
2461 ccagttaaag agaaacatcc aaaaatagct ttgttttgta ccaacaggaa ttagaaaata
2521 taatgaaaag atttcgttcc cagcagcatc aagaaaagta gattttctag aaataaacag
2581 ttatggagga cttgtatgga gaaatttaag tcttcactga gggccacttt acaaaggaaa
2641 tttgaataaa tggagagaga gagaagcctt gttgttggat aggaaaaccc gtactaaaga
2701 tactctacct acattaattt atttgtttaa tttttgacaa caagcatgta ttacttttga
2761 aaagatgaaa aataaagatt tatttaaaaa agaaaaaaaa aaaaaaaa
//