LOCUS BC048275 2780 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens neuronal pentraxin II, mRNA (cDNA clone MGC:54313
IMAGE:5165672), complete cds.
ACCESSION BC048275
VERSION BC048275.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2780)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2780)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 93 Row: f Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28195383.
FEATURES Location/Qualifiers
source 1..2780
/db_xref="H-InvDB:HIT000098944"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54313 IMAGE:5165672"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2780
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
CDS 136..1431
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/codon_start=1
/product="neuronal pentraxin II"
/protein_id="AAH48275.2"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
/translation="MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLP
AMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKA
RGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE
VLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSA
FKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQA
NEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGT
GENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIA
NCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL"
BASE COUNT 651 a 784 c 790 g 555 t
ORIGIN
1 gagacttctg ccccgcggtg cacgcgaccc tcgagacgac agcgcggcta ctgccagcag
61 cgaaggcgcc tcccgcggag cgcccagacg gcgcccgctc gcccatgccg agctgagcgc
121 ggcagcggcg gcgggatgct ggcgctgctg gccgccagcg tggcgctcgc cgtggccgct
181 ggggcccagg acagcccggc gcccggtagc cgcttcgtgt gcacggcact gcccccagag
241 gcggtgcacg ccggctgccc gctgcccgcg atgcccatgc agggcggcgc gcagagtccc
301 gaggaggagc tgagggccgc ggtgctgcag ctgcgcgaga ccgtcgtgca gcagaaggag
361 acgctgggcg cgcagcgcga ggccatccgc gagctcacgg gcaagctagc gcgctgcgag
421 gggctggcgg gcggcaaggc gcgcggcgcg ggggccacgg gcaaggacac tatgggcgac
481 ctgccgcggg accccggcca cgtcgtggag cagctcagcc gctcgctgca gaccctcaag
541 gaccgcctgg agagcctcga gcaccagctc agagcaaacg tgtccaatgc tgggctgccc
601 ggcgacttcc gcgaggtgct ccagcagcgg ctgggggagc tggagaggca gcttctgcgc
661 aaggtggcag agctggagga cgagaagtcc ctgctgcaca atgagacctc ggctcaccgg
721 cagaagaccg agagcaccct gaacgcgctg ctgcagaggg tcaccgagct ggagcgaggc
781 aatagcgcct ttaagtcacc agatgcgttc aaggtgtccc tcccactccg cacaaactac
841 ctatacggca agatcaagaa gacgctgcct gagctgtacg ccttcaccat ctgcctgtgg
901 ctgcggtcca gcgcctcacc aggcattggc acccccttct cctatgcggt gccagggcag
961 gccaacgaga tcgtgctgat cgagtggggc aacaacccca tcgagctgct catcaacgac
1021 aaggttgcgc agctgcccct gtttgtcagt gacggcaagt ggcaccacat ctgtgtcacc
1081 tggacgacac gggatggcat gtgggaggca ttccaggacg gagagaagct gggcactggg
1141 gagaacctgg ccccctggca ccccatcaag cccgggggcg tgctgatcct tggacaagag
1201 caggacaccg tggggggtag gtttgatgcc actcaggcat ttgtcgggga gctcagccag
1261 ttcaacatat gggaccgcgt ccttcgcgca caagaaattg tcaacatcgc caactgctcc
1321 acaaacatgc cgggcaacat catcccgtgg gtggacaata acgtcgatgt gttcggaggg
1381 gcctccaagt ggcccgtgga gacgtgtgag gagcgtctcc ttgacttgta gccgccttct
1441 cctctgtcca ggaggccggg atcaggctgt tgccatggaa gttcagggcc atagactgcc
1501 ccacttaaac tcttgtcagt ctgggctcag ggttcccaga gctcattccc caggaatctc
1561 taagaccagg gctggggcag tgtctgtcac tggcttgttt gttccctacc aatattctgt
1621 tgctgtttga agtagtgcca gggtcccctg ggaagatgcc cccaagacac ctgccccaag
1681 tgggtggata tctgccttcc tgctgcaagt ggaggcaggt ccagcagccc ctcttcagag
1741 cccctgtaaa tgctatcgca gcctgagtcc tgccgccttc cagttccttg gtgtcccgtg
1801 caccccttct gtctgtcccc tttcatggct gtgcagccgt cccgctggag tggccatgtc
1861 ccttgtgcat tgagtgcatc cccgctggtg actaagctcg cagcaagcgg ctaccccccg
1921 atctgcaaaa gggcctctcc ctttgtgttc tatacattgt gaatcttccc gtctgaagaa
1981 cgcccagcct gcccagacaa agccccgcct tccccaaagc agaggggctg tctgtgtctc
2041 cagaaagggg acatcggggg ggaggggggc tcagaaagga gaagggctgt gatctccggt
2101 cccttccccc atcatccttc cttagactga tgctttgact gaatcatcac tagctatggc
2161 attaaaaggc ctctcttctc atctggtgcc aaaggttccg ttgcagcttt ttacaaccat
2221 ccggtgtggt ttggaggttt tgtttttttt ttttcccaac agaaaagaac agccattaga
2281 agaaggctcc cattttctga tgttccgccc cactgtgaag agtgtgctcg ttttaaattc
2341 atgttgattc ttgtaagcac tggactgtct tcatcaagta tttccctaca gaactcctca
2401 agaaaacaga gatcatttgg ctagagattg tctgagtgac tccaagctac tcactgtatt
2461 ggacgggagt agtaatttat tttaaagata aagtgactaa gtggggaaat ttataaagct
2521 aaatattata tattttattt ttcatacatg tttgaagtgc aaatctgtgg atattccatt
2581 tgtaggacca agtcgacatg cccatcctga cattgtatgc tacgagaact cttctgatga
2641 tggaatttcg attaaagtgc actgaaagat gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2761 aaaaaaaaaa aaaaaaaaaa
//