LOCUS BC048194 3547 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 56, mRNA (cDNA clone
MGC:52308 IMAGE:5814702), complete cds.
ACCESSION BC048194
VERSION BC048194.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3547)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3547)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: o Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30794215.
FEATURES Location/Qualifiers
source 1..3547
/db_xref="H-InvDB:HIT000053301"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:52308 IMAGE:5814702"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..3547
/gene="TRIM56"
/gene_synonym="DKFZP667O116"
/gene_synonym="RNF109"
/db_xref="GeneID:81844"
/db_xref="HGNC:HGNC:19028"
CDS 232..2499
/gene="TRIM56"
/gene_synonym="DKFZP667O116"
/gene_synonym="RNF109"
/codon_start=1
/product="tripartite motif-containing 56"
/protein_id="AAH48194.1"
/db_xref="GeneID:81844"
/db_xref="HGNC:HGNC:19028"
/translation="MVSHGSSPSLLEALSSDFLACKICLEQLRAPKTLPCLHTYCQDC
LAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACA
LCPLVGGTSTGGPATARCLDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEE
ARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEG
LLAGVDNNLVELEAARRVEKEALARLREQAARVGTQVEEAAEGVLRALLAQKQEVLGQ
LRAHVEAAEEAARERLAELEGREQVARAAAAFARRVLSLGREAEILSLEGAIAQRLRQ
LQGCPWAPGPAPCLLPQLELHPGLLDKNCHLLRLSFEEQQPQKDGGKDGAGTQGGEES
QSRREDEPKTERQGGVQPQAGDGAQTPKEEKAQTTREEGAQTLEEDRAQTPHEDGGPQ
PHRGGRPNKKKKFKGRLKSISREPSPALGPNLDGSGLLPRPIFYCSFPTRMPGDKRSP
RITGLCPFGPREILVADEQNRALKRFSLNGDYKGTVPVPEGCSPCSVAALQSAVAFSA
SARLYLINPNGEVQWRRALSLSQASHAVAALPSGDRVAVSVAGHVEVYNMEGSLATRF
IPGGKASRGLRALVFLTTSPQGHFVGSDWQQNSVVICDGLGQVVGEYKGPGLHGCQPG
SVSVDKKGYIFLTLREVNKVVILDPKGSLLGDFLTAYHGLEKPRVTTMVDGRYLVVSL
SNGTIHIFRVRSPDS"
BASE COUNT 730 a 1020 c 1187 g 610 t
ORIGIN
1 cagcaacggc ggcctccagg cctcaggccc cctcaccatc ctagaggtca agatcagctc
61 tggctagttc tcacaggtct gacccaacaa gtagcactga catttttacg tttgctggat
121 gtacacacgg aagtggagga ggaggaggag aaggaggagg gcagctcctt agctcaagag
181 caagtggccc aaggcctcag aagactagaa ggaagttcct ggccattcag catggtttcc
241 cacgggtcct cgccctccct cctggaggcc ctgagcagcg acttcctggc ctgtaaaatc
301 tgcctggagc agctgcgggc acccaagaca ctgccctgcc tgcataccta ctgccaagac
361 tgcctggcac agctggcgga tggcggccgc gtccgctgcc ccgagtgccg cgagacagtg
421 cctgtgccgc ccgagggtgt ggcctccttc aagaccaact tcttcgtcaa tgggctgctg
481 gacctggtga aggcccgggc ctgtggagac ctgcgtgccg ggaagccagc ctgtgccctg
541 tgtcccctgg tgggtggcac cagcaccggg gggccggcca cggcccggtg cctggactgt
601 gccgatgact tgtgccaggc ctgtgccgac gggcaccgct gcacccgcca gacccacacc
661 caccgcgtgg tggacctggt gggctacagg gccgggtggt atgatgagga ggcccgggag
721 cgccaagcgg cccagtgtcc ccagcacccc ggggaggcac tgcgcttcct gtgccagccc
781 tgctcacagt tgctgtgcag agagtgccgc ctagaccccc acctggacca cccctgcctg
841 cctctggctg aagctgtgcg tgcccggagg ccgggcctgg agggactgct ggccggtgtg
901 gacaataacc tggtggagct ggaggcagcg cggagggtgg agaaggaggc gctagcccgg
961 ctgcgggagc aggcggcccg ggtggggact caggtggagg aggcggctga gggcgtcctc
1021 cgggccctgc tggcccagaa gcaggaggtg ctggggcagc tacgagccca cgtggaggct
1081 gccgaagaag ctgctcggga gaggctggcg gagcttgagg gccgggagca ggtggccagg
1141 gcggcagccg ccttcgcccg ccgggtactc agcctggggc gagaggccga gatcctctcc
1201 ctggaagggg cgatcgcaca gcggctcagg cagctgcagg gctgcccctg ggcaccaggc
1261 ccggccccct gcctgctccc acagctggag ctccatcctg ggctcctgga caagaactgc
1321 caccttcttc ggctgtcctt tgaggagcag cagccccaga aggatggtgg gaaagacgga
1381 gctggtaccc agggaggtga ggagagccag agccggaggg aggatgagcc gaagactgag
1441 agacagggtg gagtccagcc ccaggccgga gatggagccc agaccccaaa agaggaaaaa
1501 gcccagacaa cccgagaaga gggagcccag accttggagg aggacagggc ccagacaccc
1561 cacgaggatg gaggacccca gccccacagg ggtggcagac ccaacaagaa gaaaaagttc
1621 aaaggcaggc tcaagtcaat ttcccgggag cccagcccag ccctggggcc gaatctggac
1681 ggctctggcc tcctccccag acccatcttt tactgcagtt tccccacgcg gatgcctgga
1741 gacaagcggt ccccccggat caccgggctc tgtcccttcg gtccccggga gatcctggtg
1801 gcggatgagc agaaccgggc actgaaacgc ttctccctca acggcgacta caagggcacc
1861 gtgccggtcc ctgagggctg ctccccttgc agcgtggccg ccctgcagag cgcggtggcc
1921 ttctccgcta gcgcacggct ctatctcatc aaccccaacg gcgaagtgca gtggcgcagg
1981 gccctgagcc tctcccaggc cagccacgcg gtggcggcac tgcctagcgg ggaccgcgtg
2041 gctgtcagcg tggcgggcca cgtggaggtg tacaatatgg aaggcagcct ggccacccgg
2101 ttcattcctg gaggcaaggc cagccggggc ctgcgggcgc tggtgtttct gaccaccagc
2161 ccccaggggc atttcgtggg gtcggactgg cagcagaata gtgtggtaat ctgtgatggg
2221 ctgggccagg tggttgggga gtacaagggg ccaggcctgc atggctgcca gccgggctcc
2281 gtgtctgtgg ataagaaggg ctacatcttt ctgacccttc gagaagtcaa caaggtggtg
2341 atcctggacc cgaaggggtc cctccttgga gacttcctga cagcctacca cggcctggaa
2401 aagccccggg ttaccaccat ggtggatggc aggtacctgg tcgtgtccct cagtaacggg
2461 accatccaca tctttcgggt ccgttctccg gacagttaaa ggggctagga ctagggtgag
2521 agggagtggg gagggagagg gcaggaagga ggcagagctg tccgtgggag gtggaggccg
2581 aggacatttt cctgaagggc aggggttggc aacttttcaa catggagtgc caaactgcta
2641 acccgtcttc tagtgtgtga gaatagggac caaggtggtg gcgtgacctt aactctcaga
2701 agcagaggag gcaggtgggt ggagggggat gctgggaatt cacctgcctc ttgctttttg
2761 tgggtggctg ctgccaccac cgccgctgct atatagttta ggtttctgag gtttgtgagc
2821 ctgtcctgct ttgcattctt caaaaccatt cctgatagag tagccgaggg agagtcttgg
2881 ggccaagaag ggcccagggt gggtcaggcg tgtgcactgt ggaacagagc tgagaccccg
2941 gccccccttg gactggcaca gggtcctaca gagtcagagg aggcctgaga tttcgaatgg
3001 gcagtgaatg gcctcttctg ccagccacag gcaggatgct ccttgatcac ggcatccccc
3061 ggcggtagta cagggtgagc ttgcaggagg gtctgcaagt gcagacagca gctggggcca
3121 aagaggtgtt aggttcaaag gctgcgaaga gaataggcta ctggaaaacc aaacccaaca
3181 gaattcacgt ccaaaaatcc acattctcca tcgcttctca gccttttggc taagattaag
3241 tattaaaaaa aaaccaggct ctgccaggcg cagtggctca tgcctataat cccggcactt
3301 tgggagtctg tggcaggagg attgcttgag gccaggagtt tgagaccagc ctgggcaaca
3361 tagcgagacc ccatctctac aaaagattaa aaattagctg cgtgtagtag catatgcctt
3421 tcaacgtagc tactcaggag gctgaggtgg gaggatccct tgagccgagg agtttgagtc
3481 tgcagtgagc tatgatcgca ccactgcatt ccagacccca tctcgaaaaa aaaaaaaaaa
3541 aaaaaaa
//