LOCUS BC048120 2801 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens chromosome 12 open reading frame 40, mRNA (cDNA clone
MGC:57397 IMAGE:5266211), complete cds.
ACCESSION BC048120
VERSION BC048120.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2801)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2801)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: j Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27734764.
FEATURES Location/Qualifiers
source 1..2801
/db_xref="H-InvDB:HIT000053297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57397 IMAGE:5266211"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2801
/gene="C12orf40"
/db_xref="GeneID:283461"
/db_xref="HGNC:HGNC:26846"
CDS 155..2113
/gene="C12orf40"
/codon_start=1
/product="chromosome 12 open reading frame 40"
/protein_id="AAH48120.3"
/db_xref="GeneID:283461"
/db_xref="HGNC:HGNC:26846"
/translation="MNWVGGSRSRVLIKQERRKQKEYFEKHRLKSKMKSLGVLSPVKN
SAVSLDILNLYMVNQISCKKKIPETVRKPTHVNMNRDIKMPLRKHNLELTMSPHCVPS
KLCLDDTETNVNCQRLSSKEDLGPVQSQGMDSYSMLHPQFSKIENCSFTPSSFSVELP
SNRHISKLNFTSGIAPTPQKLAYEKKQNDQRSTVNCSDSLLSKLNKSQDVFSPSHKTT
RFGTLFERLNSLGNRNLLTKSPAVIMDEDCRSTDEIRQSDYITEKHSIQHIWGKNGKE
VSNFLEDVNQSTPNLLSENCDSFVSQNMINVLNIDEQRIKKTFNKCDYDSMGDTCVVT
SSDKNHVTDRCIRNIFTVPELTFSNSTLNKTSYPEKCQPNKKYQREYNKNERNDLSTS
FENDYYPSSSERKEKFENDYQEKTPQKSIQKYPANSMGNIPSEELHSKQSWDFGLDEI
LMEEGGIYSLKSKRISTKKISLDSAQSSRSTSYSPRPTDSCFSSSSDLPSEDEDQISQ
QIEDSNRMTIKTKEKMNNFYVERMAKLSGDRIVKNDDKIHKQNENFYQFSVKNNTDQF
PQLQCNSAHILQNKTNDNCVLQAARCDAGIQTESESVMEEKLDVAIQCDLISKCTCRS
DVSLCNLERCSGNIKADTTGGQEIHKNN"
BASE COUNT 1021 a 444 c 519 g 817 t
ORIGIN
1 aggttgggcc tcaggcggtg gaccagaagg agcttactcg ggccctgacg ttgtcaggag
61 gccctggggg atcctgctga agctgcgatt tggcgcagag ctgagatgtc tgagctctag
121 acacagggac ctcagtgtca aaagatttgg gaagatgaat tgggtcgggg ggtcccggtc
181 cagggttctg atcaagcagg aaagaagaaa gcaaaaggaa tattttgaaa aacacaggtt
241 aaaatcaaaa atgaaatcgc tgggagtttt atctcctgtc aaaaattctg ctgtcagctt
301 agacattctt aacctatata tggtaaatca gatatcttgc aagaagaaaa ttcctgaaac
361 tgtgagaaaa ccaacccatg tgaacatgaa tagagacata aaaatgcccc taagaaagca
421 taatttagaa cttacaatgt cgcctcactg tgtaccttct aaactctgcc ttgatgatac
481 agaaaccaat gtaaactgtc aaagactaag tagcaaggaa gatcttggcc cagtccagtc
541 acaaggcatg gactcatata gtatgcttca ccctcagttc agcaaaatag agaactgcag
601 tttcactcca tcatcttttt cagtggagtt accttctaac agacatattt caaaactaaa
661 tttcacatct ggaatagcac ctactcctca gaaacttgca tatgaaaaaa agcagaatga
721 ccagcgcagt actgttaact gttctgattc cttgctttcc aaattaaata aaagtcaaga
781 tgttttcagt ccatcacata aaactacacg atttgggaca ttatttgaaa gattaaacag
841 tctaggaaat aggaatttac ttactaaaag ccctgctgta attatggatg aagattgtag
901 aagcacggat gaaataagac agtcagacta cattactgaa aaacactcaa tacagcatat
961 ttgggggaaa aatggaaagg aagtttcaaa ttttcttgaa gatgtgaacc agtctactcc
1021 taaccttcta tcagagaatt gtgactcttt tgttagtcaa aatatgatca atgtattaaa
1081 catagatgag caaaggataa agaaaacatt taacaagtgt gattatgata gtatgggaga
1141 tacttgtgta gtcactagtt ctgataaaaa ccatgtcact gacagatgca ttagaaacat
1201 ttttacagtt ccagagttga cttttagtaa ttcgactttg aataaaacaa gttatccaga
1261 aaaatgtcag ccaaacaaga agtatcagag agagtataac aaaaatgaaa gaaatgatct
1321 tagtacatct tttgagaacg attactaccc aagcagctct gaaagaaaag aaaaatttga
1381 aaatgattac caagagaaga caccacagaa aagtattcag aaatatccag caaactctat
1441 gggaaatata ccttcggaag aattgcactc taagcagtca tgggactttg gacttgatga
1501 gattctgatg gaagaaggag gaatatattc tttaaaaagc aagcgaatat ctactaagaa
1561 aatctctctt gattctgcac agagtagtcg gtctactagt tactctccaa gaccaacaga
1621 cagctgtttc agttctagtt cagatttgcc atctgaagat gaagatcaaa tatcacagca
1681 aattgaagat tcaaatagga tgaccatcaa aaccaaggaa aaaatgaata atttttatgt
1741 agaaaggatg gcaaaacttt caggtgacag gattgttaaa aacgatgaca aaattcacaa
1801 acagaatgag aatttctacc agttctcagt gaaaaataat acagatcagt ttccacagtt
1861 gcagtgcaat tcagcccaca ttttgcaaaa caaaaccaat gataactgcg ttctgcaggc
1921 tgcaaggtgt gatgcaggga tacaaacaga gagtgaatct gtaatggagg aaaaattaga
1981 tgttgccata cagtgtgatc taatttcaaa atgtacatgt agaagtgatg tttctctttg
2041 caaccttgaa aggtgcagtg gaaatattaa ggcagatacc actggagggc aggaaatcca
2101 taagaacaac taatattcta aaatctctac ctaggatgta gaatttcact tgcccttaga
2161 aaacaacagt aaatgttgaa aatttcatta acatgataag aaatgagaaa aagtagctaa
2221 gcataagctg acagtgttca gggtgtatat tcacggttca tgttaaaaca ttttaatatt
2281 attaatgtat gtatttaatt tgtatatagc catttcctta atagctttgg tatatggtag
2341 agtttttaga aaataatata tttgtaaatg tactagcgtt tttatgtgat tattcagtat
2401 attacaatga tgcgctgtta tttatgggtt aaaatatgct taattgcttc cttccttgta
2461 gcatttattt taatattctt tgcagttgca ttttctggca aaaatgttcc ctttcaagat
2521 atttaagata gaaaataata cctaatatat tttatgtcct cattataata attttgttag
2581 ctacttctct ttaatattac agtcctattt aaaaattcta gcattaattt gtagataaca
2641 catatcttct atttgcataa catagttttt ttgttggtgc tattaattca aaggaaaatg
2701 ttctgtagga ttaaaagatg ttttaatgtt tttataaaat aattgtttga aattaaaaaa
2761 tgatttatgt tactaaaaaa aaaagaaaaa aaaaaaaaaa a
//