LOCUS BC048104 2046 bp mRNA linear HUM 28-JUL-2006 DEFINITION Homo sapiens 5'-3' exoribonuclease 1, mRNA (cDNA clone IMAGE:4820049), complete cds. ACCESSION BC048104 VERSION BC048104.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2046) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2046) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (04-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 106 Row: c Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254886 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2046 /db_xref="H-InvDB:HIT000053293" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4820049" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2046 /gene="XRN1" /gene_synonym="DKFZp434P0721" /gene_synonym="SEP1" /db_xref="GeneID:54464" /db_xref="HGNC:HGNC:30654" /db_xref="MIM:607994" CDS 26..1405 /gene="XRN1" /gene_synonym="DKFZp434P0721" /gene_synonym="SEP1" /codon_start=1 /product="XRN1 protein" /protein_id="AAH48104.1" /db_xref="GeneID:54464" /db_xref="HGNC:HGNC:30654" /db_xref="MIM:607994" /translation="MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCS HPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRF RSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAKLHEHLKYFVNMKISTDKS WQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHE AHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIE RIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLP RFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKG QENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSEY VFANAFILK" BASE COUNT 710 a 316 c 408 g 612 t ORIGIN 1 actgggatta gtgttgacga tcgaaatggg agtccccaag ttttacagat ggatctcaga 61 gcggtatccc tgtctcagcg aagtggtgaa agagcatcag attcctgaat ttgacaactt 121 gtacctggat atgaatggaa ttatacatca gtgctcccat cctaatgatg atgatgttca 181 ctttagaatt tcagatgata aaatctttac tgatattttt cactacctgg aggtgttgtt 241 tcgcattatt aaacccagga aagtgttctt tatggctgta gatggtgtgg ctcctcgagc 301 aaaaatgaac cagcagcgtg ggaggcgttt taggtcagca aaggaggcag aagacaaaat 361 taaaaaggca atagagaagg gagaaactct tcctacagag gccagatttg attccaactg 421 tatcacacca ggaactgaat ttatggccaa gttacatgaa catctgaagt attttgtaaa 481 tatgaaaatt tccacagaca agtcatggca aggagttacc atctacttct caggccatga 541 gactcctgga gaaggagagc ataaaatcat ggaatttatc agatccgaga aagcaaagcc 601 agatcatgat ccaaacacca gacactgtct ttatggttta gatgctgact tgattatgct 661 tggattaaca agtcatgagg cacatttttc tctcttaaga gaagaagttc gatttggtgg 721 caaaaaaaca caacgggtat gtgctccaga agaaactaca tttcaccttc tacacttgtc 781 tttaatgaga gagtatattg actatgagtt ttcagtatta aaagaaaaga tcacatttaa 841 atatgatatt gaaaggataa tagatgattg gattttgatg gggtttcttg ttggtaatga 901 ttttatccct catctacctc atttacatat taatcatgat gcactgcctc ttctttatgg 961 aacatatgtt accatcctgc cagaacttgg gggttatatt aatgaaagtg ggcacctcaa 1021 cttacctcga tttgagaaat accttgtgaa actatcagat tttgatcggg agcacttcag 1081 tgaagttttt gtggacctaa aatggtttga aagcaaagtt ggtaacaagt acctcaatga 1141 agcagcaggt gtcgcagcag aagaagccag gaactacaag gaaaagaaaa agttaaaggg 1201 ccaggaaaat tctctgtgtt ggactgcttt agacaaaaat gaaggcgaaa tgataacttc 1261 taaggataat ttagaagatg agactgaaga tgatgaccta tttgaaactg agtttagaca 1321 atataaaaga acatattaca tgacgaagat gggggttgac gtagtatctg agtacgtttt 1381 tgccaatgct tttattttaa aatagaaaaa attagatttt gcagttattc agaaaatatg 1441 attttgatga agtagtggga gaaaaaggat tttttggttt catgaattat tgtgtatgtt 1501 tcaactagtc tggttttgga gaagatggta ttaattctga cttgtattat attcctgtga 1561 taaaaattgc tgaagagaaa atgatcctta tgtataagga tttttgttac aaagttgttt 1621 ataatagtaa aaaaattaga aataatctaa atgtccaata agaaggttca tcataattgg 1681 ccactgcttc ttcattacag tcaccatctc tgtcacctct tccatctccg gaatctgcag 1741 aactgctaaa ctggtacttg cagaaagttc ataacaattt ggaaggatgc ttatagtaca 1801 ttattaagta caaattgtaa aggcaagaca tgaaatcata catacagtat gctctcatta 1861 accttaaaaa aaacctagat atagataaaa gactgaaaca ctaaaaatgt aaaagtgatg 1921 gctataagat gataaaaatg ctgttcttca ttgtccagat tttcactcct gaggaaatag 1981 ttcttttata ataaaaaagc aatatttttc atattaaaaa actacctccc aaaaaaaaaa 2041 aaaaaa //