LOCUS       BC048104                2046 bp    mRNA    linear   HUM 28-JUL-2006
DEFINITION  Homo sapiens 5'-3' exoribonuclease 1, mRNA (cDNA clone
            IMAGE:4820049), complete cds.
ACCESSION   BC048104
VERSION     BC048104.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2046)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAR-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 106 Row: c Column: 21
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 40254886
            This clone has the following problem: The cds is short compared to
            the longest cds in the locus.
FEATURES             Location/Qualifiers
     source          1..2046
                     /db_xref="H-InvDB:HIT000053293"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:4820049"
                     /tissue_type="Brain, hippocampus"
                     /clone_lib="NIH_MGC_95"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..2046
                     /gene="XRN1"
                     /gene_synonym="DKFZp434P0721"
                     /gene_synonym="SEP1"
                     /db_xref="GeneID:54464"
                     /db_xref="HGNC:HGNC:30654"
                     /db_xref="MIM:607994"
     CDS             26..1405
                     /gene="XRN1"
                     /gene_synonym="DKFZp434P0721"
                     /gene_synonym="SEP1"
                     /codon_start=1
                     /product="XRN1 protein"
                     /protein_id="AAH48104.1"
                     /db_xref="GeneID:54464"
                     /db_xref="HGNC:HGNC:30654"
                     /db_xref="MIM:607994"
                     /translation="MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCS
                     HPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRF
                     RSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMAKLHEHLKYFVNMKISTDKS
                     WQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHE
                     AHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIE
                     RIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLP
                     RFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKG
                     QENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSEY
                     VFANAFILK"
BASE COUNT          710 a          316 c          408 g          612 t
ORIGIN      
        1 actgggatta gtgttgacga tcgaaatggg agtccccaag ttttacagat ggatctcaga
       61 gcggtatccc tgtctcagcg aagtggtgaa agagcatcag attcctgaat ttgacaactt
      121 gtacctggat atgaatggaa ttatacatca gtgctcccat cctaatgatg atgatgttca
      181 ctttagaatt tcagatgata aaatctttac tgatattttt cactacctgg aggtgttgtt
      241 tcgcattatt aaacccagga aagtgttctt tatggctgta gatggtgtgg ctcctcgagc
      301 aaaaatgaac cagcagcgtg ggaggcgttt taggtcagca aaggaggcag aagacaaaat
      361 taaaaaggca atagagaagg gagaaactct tcctacagag gccagatttg attccaactg
      421 tatcacacca ggaactgaat ttatggccaa gttacatgaa catctgaagt attttgtaaa
      481 tatgaaaatt tccacagaca agtcatggca aggagttacc atctacttct caggccatga
      541 gactcctgga gaaggagagc ataaaatcat ggaatttatc agatccgaga aagcaaagcc
      601 agatcatgat ccaaacacca gacactgtct ttatggttta gatgctgact tgattatgct
      661 tggattaaca agtcatgagg cacatttttc tctcttaaga gaagaagttc gatttggtgg
      721 caaaaaaaca caacgggtat gtgctccaga agaaactaca tttcaccttc tacacttgtc
      781 tttaatgaga gagtatattg actatgagtt ttcagtatta aaagaaaaga tcacatttaa
      841 atatgatatt gaaaggataa tagatgattg gattttgatg gggtttcttg ttggtaatga
      901 ttttatccct catctacctc atttacatat taatcatgat gcactgcctc ttctttatgg
      961 aacatatgtt accatcctgc cagaacttgg gggttatatt aatgaaagtg ggcacctcaa
     1021 cttacctcga tttgagaaat accttgtgaa actatcagat tttgatcggg agcacttcag
     1081 tgaagttttt gtggacctaa aatggtttga aagcaaagtt ggtaacaagt acctcaatga
     1141 agcagcaggt gtcgcagcag aagaagccag gaactacaag gaaaagaaaa agttaaaggg
     1201 ccaggaaaat tctctgtgtt ggactgcttt agacaaaaat gaaggcgaaa tgataacttc
     1261 taaggataat ttagaagatg agactgaaga tgatgaccta tttgaaactg agtttagaca
     1321 atataaaaga acatattaca tgacgaagat gggggttgac gtagtatctg agtacgtttt
     1381 tgccaatgct tttattttaa aatagaaaaa attagatttt gcagttattc agaaaatatg
     1441 attttgatga agtagtggga gaaaaaggat tttttggttt catgaattat tgtgtatgtt
     1501 tcaactagtc tggttttgga gaagatggta ttaattctga cttgtattat attcctgtga
     1561 taaaaattgc tgaagagaaa atgatcctta tgtataagga tttttgttac aaagttgttt
     1621 ataatagtaa aaaaattaga aataatctaa atgtccaata agaaggttca tcataattgg
     1681 ccactgcttc ttcattacag tcaccatctc tgtcacctct tccatctccg gaatctgcag
     1741 aactgctaaa ctggtacttg cagaaagttc ataacaattt ggaaggatgc ttatagtaca
     1801 ttattaagta caaattgtaa aggcaagaca tgaaatcata catacagtat gctctcatta
     1861 accttaaaaa aaacctagat atagataaaa gactgaaaca ctaaaaatgt aaaagtgatg
     1921 gctataagat gataaaaatg ctgttcttca ttgtccagat tttcactcct gaggaaatag
     1981 ttcttttata ataaaaaagc aatatttttc atattaaaaa actacctccc aaaaaaaaaa
     2041 aaaaaa
//