LOCUS BC048013 4139 bp mRNA linear HTC 28-JUL-2005
DEFINITION Homo sapiens plakophilin 4, mRNA (cDNA clone IMAGE:5276764).
ACCESSION BC048013
VERSION BC048013.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4139)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: f Column: 14
This clone has the following problem: no 5' EST match.
FEATURES Location/Qualifiers
source 1..4139
/db_xref="H-InvDB:HIT000098868"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5276764"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 1146 a 1016 c 1062 g 915 t
ORIGIN
1 tctggggctg agtccgcgtc gacgccggcc gcggaggcgg caccatgggc aaggggtaga
61 ggggcaagtt ggccaccgcc gccgccgggg gtggtgggag agccgctccg ggggcggggg
121 ccggtggggg agggaggggc gggcagccgc gccgccgcgg cactttttta attttttcgg
181 gtgccgcagc ggcgacccct cggcgccgat gtccctgatc cctggagcga cgacggccgc
241 tgcgtaagct ggaaagagga atgccagctc ctgagcaggc ctcattggtg gaggaggggc
301 aaccacagac ccgccaggaa gctgcctcca ctggcccagg catggaaccc gagaccacag
361 ccaccactat tctagcatcc gtgaaggagc aggagcttca gtttcagcga ctcacccgag
421 aactggaagt ggaaaggcag attgttgcca gtcagctaga aagatgtagg cttggagcag
481 aatcaccaag catcgccagc accagctcaa ctgagaagtc atttccttgg agatcaacag
541 acgtgccaaa tactggtgta agcaaaccta gagtttctga cgctgtccag cccaacaact
601 atctcatcag gacagagcca gaacaaggaa ccctctattc accagaacag acatctctcc
661 atgaaagtga gggatcattg ggtaactcaa gaagttcaac acaaatgaat tcttattccg
721 acagtggata ccaggaagca gggagtttcc acaacagcca gaacgtgagc aaggcagaca
781 acagacagca gcattcattc ataggatcaa ctaacaacca tgtggtgagg aattcaagag
841 ctgaaggaca aacactggtt cagcacaggc gtgtctcctt caagggggtc tctgagaact
901 tctctgggta gtggatttgg ctctccgtca gtgaccgacc cccgacctct gaaccccagt
961 gcatattcct ccaccacatt acctgctgca cgggcagcct ctccgtactc acagagaccc
1021 gcctccccaa cagctatacg gcggattggg tcagtcacct cccggcagac ctccaatccc
1081 aacggaccaa cccctcaata ccaaaccacc gccagagtgg ggtccccact gaccctgacg
1141 gatgcacaga ctcgagtagc ttccccatcc caaggccagg tggggtcgtc gtcccccaaa
1201 cgctcaggga tgaccgccgt accacagcat ctgggacctt cactgcaaag gactgttcat
1261 gacatggagc aattcggaca gcagcagtat gacatttatg agaggatggt tccacccagg
1321 ccagacagcc tgacaggctt acggagttcc tatgctagtc agcatagtca gcttgggcaa
1381 gaccttcgtt ctgccgtgtc tcccgacttg cacattactc ctatatatga ggggaggacc
1441 tattacagcc cagtgtaccg cagcccaaac catggaactg tggagctcca aggatcgcag
1501 acggcgttgt atcgcacagg ttcaggtatt ggaaatctac aaaggacatc cagccaacga
1561 agtaccctta cataccaaag aaataattat gctctgaaca caacagctac ctacgcggag
1621 ccctacaggc ctatacaata ccgagtgcaa gagtgcaatt ataacaggct tcagcatgca
1681 gtgccggctg atgatggcac acaagatccc catcaataga cagcattcag aaggacccca
1741 gggagtttgc ctggcgtgat cctgagttgc ctgaggtcat tcacatgctt cagcaccagt
1801 tcccatctgt tcaggcaaat gcagcggcct acctgcagca cctgtgcttt ggtgacaaca
1861 aagtgaagat ggaggtgtgt aggttagggg gaatcaagca tctggttgac cttctggacc
1921 acagagtttt ggaagttcag aagaatgctt gtggtgccct tcgaaacctc gtttttggca
1981 agtctacaga tgaaaataaa atagcaatga agaatgttgg tgggatacct gccttgttgc
2041 gactgttgag aaaatctatt gatgcagaag taagggagct tgttacagga gttctttgga
2101 atttatcctc atgtgatgct gtaaaaatga caatcattcg agatgctctc tcaaccttaa
2161 caaacactgt gattgttcca cattctggat ggaataactc ttcttttgat gatgatcata
2221 aaattaaatt tcagacttca ctagttctgc gtaacacgac aggttgccta aggaacctca
2281 gctccgcggg ggaagaagct cggaagcaaa tgcggtcctg cgaggggctg gtagactcac
2341 tgttgtatgt gatccacacg tgtgtgaaca catccgatta cgacagcaag acggtggaga
2401 actgcgtgtg caccctgagg aacctgtcct atcggctgga gctggaggtg ccccaggccc
2461 ggttactggg actgaacgaa ttggatgact tactaggaaa agagtctccg agcaaagact
2521 ctgagccaag ttgctggggg aagaagaaga aaaagaaaaa gaggactccg caagaagatc
2581 aatgggatgg agttggtcct atccaggact gtcgaagtcc cccaaagggg ttgagatgct
2641 gtggcaccca tcggtggtaa aaccatatct gactcttcta gcagaaagtt ccaacccagc
2701 caccttggaa ggctctgcag ggtctctcca gaacctctct gctggcaact ggaagtttgc
2761 agcatatatc cgggcggccg tccgaaaaga aaaggggctc cccatccttg tggagcttct
2821 gagaatggat aacgatagag ttgtttcttc cgtggcaaca gccttgagga atatggcact
2881 agatgttcgc aacaaggagc tcataggcaa atacgccatg cgagacctgg tcaaccggct
2941 ccccggcggc aatggcccca gtgtcttgtc tgatgagacc atggcagcca tctgctgtgc
3001 tctgcacgag gtcaccagca aaaacatgga gaacgcaaaa gccctggccg actcaggagg
3061 catagagaag ctggtgaaca taaccaaagg caggggcgac agatcatctc tgaaagtggt
3121 gaaggcagca gcccaggtct tgaatacatt atggcaatat cgggacctcc ggagcattta
3181 taaaaaggat gggtggaatc agaaccattt tattacacct gtgtcgacat tggagcgaga
3241 ccgattcaaa tcacatcctt ccttgtctac caccaaccaa cagatgtcac ccatcattca
3301 gtcagtcggc agcacctctt cctcaccagc actgttagga atcagagacc ctcgctctga
3361 atacgatagg acacagccac ctatgcagta ttacaatagc caaggggatg ccacacataa
3421 aggcctgtac ccctggctcc agcaaacctt caccaattta catcagttcc tattcctcac
3481 cagcaagaga acaaaataga cggctacagc atcaacagct gtattatagt caagatgact
3541 ccaacagaaa gaactttgat gcatacagat tgtatttgca gtctcctcat agctatgaag
3601 atccttattt tgatgaccga gttcactttc cagcttctac tgattactca acacagtatg
3661 gactgaaatc gaccacaaat tatgtagact tttattccac taaacgacct tcttatagag
3721 cagaacagta cccagggtcc ccagactcat gggtgtagca tcaagatgcc caacagagga
3781 actctttctt tctaaccttg ttcagattga ggtgaaaagt ccatcttgct gatttgatga
3841 ttgaaatggg aaagtgaagt ggaaggaatg aatgaagtgt gttttttttt ttcttttttg
3901 aggaattatc agggaagtga ggaaatgttt gggagaggac tttctaagct ctatttaggt
3961 gttagatcta attacttata gattctgtag tctggtgaag gtgtgggtga cgtgatgaga
4021 ggtttgagaa atgggtgaaa tgaaatgggg gatatgtagg tcaaatcaaa ttaaagatga
4081 tttttttaat gtgaataaat ttatgttctg atagtttgta cagaaaaaaa aaaaaaaaa
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