LOCUS BC047950 2428 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens tetratricopeptide repeat domain 9, mRNA (cDNA clone
IMAGE:5763935), partial cds.
ACCESSION BC047950
VERSION BC047950.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2428)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2428)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2428
/db_xref="H-InvDB:HIT000098855"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5763935"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2428
/gene="TTC9"
/gene_synonym="KIAA0227"
/db_xref="GeneID:23508"
CDS <1..834
/gene="TTC9"
/gene_synonym="KIAA0227"
/codon_start=1
/product="TTC9 protein"
/protein_id="AAH47950.1"
/db_xref="GeneID:23508"
/translation="ENGSAGRQTAAGCHGRHEACEARGRRPRLLNPGRRGGGGGGGQI
AARTRRRGGGRMERKGSAAGAKGNPSPPAAGEGQRPPPPLCVPGGGGGAPARGQVGAA
AEPAELIRRAHEFKSQGAQCYKDKKFREAIGKYHRALLELKGLLPPPGERERDSRAAS
PAGALKPGRLSEEQSKTVEAIEIDCYNSLAACLLQAELVNYERVKEYCLKVLKKEGEN
FKALYRSGVAFYHLGDYDKALYYLKEARTQQPTDTNVIRYIQLTEMKLSRCSQREKEA
M"
misc_feature 544..753
/gene="TTC9"
/gene_synonym="KIAA0227"
/note="TPR; Region: Tetratricopeptide repeat domain"
/db_xref="CDD:cd00189"
BASE COUNT 610 a 647 c 677 g 494 t
ORIGIN
1 gagaatggga gtgcggggcg ccagaccgcc gcggggtgtc acggccgcca cgaagcctgc
61 gaggcgcggg gccggcgccc gcggctttta aacccgggaa ggcgcggcgg cggcggcggc
121 ggcgggcaga tcgcggcgcg caccaggcgc cggggcggcg gccgaatgga gagaaagggc
181 tcggcggccg gggccaaggg gaacccgagc ccgcccgcgg ccggagaggg gcagcggcca
241 ccgccgccgc tgtgcgtccc gggcggcggc ggaggagccc cagcgagggg ccaggtcggg
301 gcggcggccg agccggccga gctcatccga cgagcgcacg agttcaaaag ccaaggggcg
361 cagtgctaca aggacaagaa attccgtgaa gccataggca aataccaccg ggcgttgctg
421 gagctgaagg ggctgctgcc gccccccggg gaacgggagc gggactcgcg cgcggcctcc
481 ccggctgggg ccctgaagcc cggccgcctc tcggaggagc agagcaagac ggtggaagcc
541 atcgagatcg actgttacaa cagcctggca gcctgcctgc tccaggctga gctggtaaac
601 tatgaacgag tcaaggaata ttgcctcaaa gtcttgaaga aggaagggga gaacttcaag
661 gccctttacc ggtctggtgt ggccttctac caccttgggg actatgacaa agcactctac
721 tacctgaaag aagcaaggac ccaacaacca acagacacca acgtgattcg gtatatccag
781 ctgacggaga tgaaactcag ccgatgctcc cagagagaaa aagaagccat gtaaccagga
841 agcagctcca gagctgcgcc cacgcctgac cggggacttc caggcatccc ctggcagaga
901 gccccgtcct ggattctgtc cctttctccc cacttcttct ggctcctcat ttttcctcct
961 gttgcacccc agctctttgt ctcctcccag tacgaaaagg agagatgcaa atttggaatc
1021 tggtaggtcg cccagacaat ggagacatcc tctcctctag caggtcagcg actgagaggg
1081 gcctgacttc tgctgggaca gctggagagg agtctcatgg gctgggatgc tgttgtggcc
1141 ttgactttgg ccagtgcttc tgacagaggc ggagcctggc aagtgtacca tcccacaggc
1201 agcaggcaca cagcccatgg gctggatcct tccacacttt cctgacagac cagaaccaga
1261 gcatctcgag gcaactgtta gaaatccagg gacgagacaa acagagaagc gctggtgaag
1321 ccaacataga gactgtcaat gtgtacactg gagttcccac ccccaccccc cacccgtcac
1381 ttagcccctg cctccttccc ccactcgttg tcttggcttg tgctttctcc tctccccatc
1441 ggggatccga gactctgcca ggattcacat gccactgaag cccactcagt gccctctggt
1501 gaccacacat accattcccc cggactccca cccagcaggc agctgtgacc gcagaagggc
1561 aggatgaagt gggccaaggt ttgggacagg ttgactgtgt aggtgacagg gagggaaaga
1621 tgatggccag gggaaagagc atcgtatagg ctaggggatt gaactgtgga ctgattcagt
1681 gtaaataaaa acaaattaac aggtagtagt tcctgtcagt tctgttggaa gcagcccact
1741 ccctcacttt tactccttcc tccaaccctc aatcagagct acttacagcc aggcaggatg
1801 gggctttccc caaagcaatt ggccgtttgt ccagtggcag acaatggtgg ctacagcctt
1861 tgtgctttta agagtgggct gggattgtgg agactgccca ggggcttggc tttgtcagaa
1921 cttgtacaat cttcttttga tgaaattatc tgaactcaac atctagcaca tagaatgtgt
1981 tcaacaaatg cttgttgaat gaataaatta tgactgcaga ctggctctcc tgccttaaac
2041 taatttcatc ccagcctagt ctcctgatgt ctgtgctcgt tatgctatgc catgttgctt
2101 cagtcaaaca agaaacactt actgagggca tattgtttgc ccatcattgt gcaatatgct
2161 gtgggacatg ggatgtcgtc tcagtcttca aggaaatgga agggttaaga aatgcatatg
2221 agattattac caatgacacc tttaatttat atgatgcttt aaaattatca gagcactttc
2281 atgtattttt cgtgtgacta gtgaaaaaga caatgttgta caaaattaaa atatatacag
2341 atgcaataat gtgaatagtt aggatttatt aaatgcatta tcttcagatc aaaaaaaaaa
2401 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//