LOCUS BC047916 2293 bp mRNA linear HUM 03-JAN-2005 DEFINITION Homo sapiens signal peptide, CUB domain, EGF-like 1, mRNA (cDNA clone IMAGE:6189117), complete cds. ACCESSION BC047916 VERSION BC047916.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2293) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2293) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 107 Row: n Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2293 /db_xref="H-InvDB:HIT000053277" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6189117" /tissue_type="Peripheral Nervous System, sympathetic trunk" /clone_lib="Lupski_sympathetic_trunk" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2293 /gene="SCUBE1" /db_xref="GeneID:80274" CDS 67..1110 /gene="SCUBE1" /codon_start=1 /product="SCUBE1 protein" /protein_id="AAH47916.1" /db_xref="GeneID:80274" /translation="MGAAAVRWHLCVLLALGTRGRLAGGSGLPGSVDVDECSEGTDDC HIDAICQNTPKSYKCLCKPGYKGEGKQCEDIDECENDYYNGGCVHECINIPGNYRCTC FDGFMLAHDGHNCLDVDECQDNNGGCQQICVNAMGSYECQCHSGFFLSDNQHTCIHRS NEGMNCMNKDHGCAHICRETPKGGVACDCRPGFDLAQNQKDCTLTCNYGNGGCQHSCE DTDTGPTCGCHQKYALHSDGRTCIEKDEAAIERSQFNATSVADVDKRVKRRLLMETCA VNNGGCDRTCKDTATGVRCSCPVGFTLQPDGKTCKGQHVELCGCPCLYWPGQEPPCAC IAGPRAGLSGGHV" BASE COUNT 558 a 591 c 723 g 421 t ORIGIN 1 ggtcggtcgg gtccccgcgc cccgcacgcc cgcacgcccg cacgcccagc ggggcccgca 61 ttgaacatgg gcgcggcggc cgtgcgctgg cacttgtgcg tgctgctggc cctgggcaca 121 cgcgggcggc tggccggggg cagcgggctc ccagggtcag tcgacgtgga tgagtgctca 181 gagggcacag atgactgcca catcgatgcc atctgtcaga acacgcccaa gtcctacaaa 241 tgcctctgca agccaggcta caagggggaa ggcaagcagt gtgaagacat tgacgagtgt 301 gagaatgact actacaatgg gggctgtgtc cacgagtgca tcaacatccc ggggaactac 361 aggtgtacct gctttgatgg cttcatgctg gcacacgatg gacacaactg cctggatgtg 421 gacgagtgtc aggacaataa tggtggctgc cagcagatct gcgtcaatgc catgggcagc 481 tacgagtgtc agtgccacag tggcttcttc cttagtgaca accagcatac ctgcatccac 541 cgctccaatg agggtatgaa ctgcatgaac aaagaccatg gctgtgccca catctgccgg 601 gagacgccca aaggtggggt ggcctgcgac tgcaggcccg gctttgacct tgcccaaaac 661 cagaaggact gcacactaac ctgtaattat ggaaacggag gctgccagca cagctgtgag 721 gacacagaca caggccccac gtgtggttgc caccagaagt acgccctcca ctcagacggt 781 cgcacgtgca tcgagaagga tgaggctgca attgagcgct ctcagttcaa tgccacgtca 841 gtagctgatg tggacaagcg ggtgaaacgg cggctactca tggagacgtg cgcagtcaat 901 aacggaggct gcgaccggac atgcaaggac acagccactg gcgtgcgatg cagctgcccc 961 gttggattca cactgcagcc ggacgggaag acatgcaaag gtcagcatgt ggagctgtgt 1021 gggtgcccct gcctgtactg gcctggccaa gagcctccgt gtgcttgcat agccgggccc 1081 agggctgggc tgagcggggg ccacgtgtag ctgtgggaaa ggacacgtgg caatcatttg 1141 ctttgctgtt ggagaggcca ggaagaggga gggctggcca gcagcagggt ccccagcaga 1201 gttcgagaga acacaggtcc cacggcacat cagcaggttc ctgggccaaa aaggcactga 1261 tgtcagagaa tttggctgca cgctgggtta aacagttaag ccagcgtctc tactgtggga 1321 cttcctgggc cctcagtgat agtgtggctt cccaaggcgc gtagaatgta gcgcgtttcc 1381 gaaccccttg acctttggtt gcagtgggtc ttgcagagct gatggggaca gtctggtgtt 1441 gggccatctg ggacacacag gtctactcat gccaggaaaa ataaggacag tgtgtcacta 1501 ctaggggggc gaggctaggg ggatcccatc tgaaaagata aggactcagg acttctgctt 1561 gccatcagaa aatgaggagt caggaagacc tgagagtgac tggttgaagg aaggagggac 1621 agggctggcc tgctggtggc tggcagtgag ggaaggcaga ggtgtatcct cccacttgtc 1681 ccctgagtca ccccacaaag acttactgag tacctcctgg gttgagggga ccctcaggaa 1741 acaggaagcc cagggagctg ggagaggaga gctgggtggg ctctcgagac agccctgcag 1801 atgaggaggt ccagctaccc ccaaaggaca gacggagccc caagaagctg tgggccctgg 1861 ggcaggttgt taggcctgag tgccggagcc ctctgtgcag aagggtgagg ggcagtgctc 1921 agtgccccca gcatcactcc agaccaccct ccaaacgccc ccaccccagc gctgggcagt 1981 acccccacac tctgccagga agggagagcc tagagagcag ggcgtggagg ggagaggaac 2041 tggaacttcc aaagtcccat cggggaaaat attgaaagtg gaggttaggg tgacttaaaa 2101 tagcttgagg tggacttttt ttaagcctgt aaaaataaat gtatttttgt acagtgtatg 2161 acttcttcct tgccaacttg ctgggaagaa ccgagtgatt attgacagaa ataacagtgc 2221 ttccgcctgt ttatttgaaa ataaagccct tctgtggcca ccaaaaaaaa aaaaaaaaaa 2281 aaaaaaaaaa aaa //