LOCUS BC047883 1732 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens SEC31 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:6203896), complete cds.
ACCESSION BC047883
VERSION BC047883.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1732)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1732)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC047883.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: p Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41349438
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1732
/db_xref="H-InvDB:HIT000053268"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6203896"
/tissue_type="Peripheral Nervous System, sciatic nerve"
/clone_lib="Lupski_sciatic_nerve"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1732
/gene="SEC31A"
/gene_synonym="ABP125"
/gene_synonym="ABP130"
/gene_synonym="HSPC275"
/gene_synonym="HSPC334"
/gene_synonym="KIAA0905"
/db_xref="GeneID:22872"
/db_xref="HGNC:HGNC:17052"
/db_xref="MIM:610257"
CDS 102..1631
/gene="SEC31A"
/gene_synonym="ABP125"
/gene_synonym="ABP130"
/gene_synonym="HSPC275"
/gene_synonym="HSPC334"
/gene_synonym="KIAA0905"
/codon_start=1
/product="SEC31A protein"
/protein_id="AAH47883.1"
/db_xref="GeneID:22872"
/db_xref="HGNC:HGNC:17052"
/db_xref="MIM:610257"
/translation="MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLE
IFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYD
PSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMT
PGAKTQPPEDISCIAWNRQVQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSG
LAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSMADPELL
LSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIM
GGSTDGLRQKQVDKLSSSFGNLDPFGTGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRR
PVGASFSFGGKLVTFENVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQ
SQGFINYCQKKIDASQTEFEKNVWSFLKVNFEDDSRGKYLELLGYRKEDLGKKVNFWE
S"
BASE COUNT 503 a 368 c 405 g 456 t
ORIGIN
1 gtggccctgg ccggggagga ggggcggcgg cgaatgctgg gagagtccga cgagcgctgc
61 actaacgcag gatccggctg ccgaaggtcc tcgccagcag gatgaagtta aaggaagtag
121 atcgtacagc catgcaggca tggagccctg cccagaatca ccccatttac ctagcaacag
181 gaacatctgc tcagcaattg gatgcaacat ttagtacgaa tgcttccctt gagatatttg
241 aattagacct ctctgatcca tccttggata tgaaatcttg tgccacattc tcctcttctc
301 acaggtacca caagttgatt tgggggcctt ataaaatgga ttccaaagga gatgtctctg
361 gagttctgat tgcaggtggt gaaaatggaa atattattct ctatgatcct tctaaaatta
421 tagctggaga caaggaagtt gtgattgccc agaatgacaa gcatactggc ccagtgagag
481 ccttggatgt gaacattttc cagactaatc tggtagcttc tggtgctaat gaatctgaaa
541 tctacatatg ggatctaaat aattttgcaa ccccaatgac accaggagcc aaaacacagc
601 cgccagaaga tatcagctgc attgcatgga acagacaagt tcagcatatt ttagcatcag
661 ccagtcccag tggccgggcc actgtatggg atcttagaaa aaatgagcca atcatcaaag
721 tcagtgacca tagtaacaga atgcattgtt ctgggttggc atggcatcct gatgttgcta
781 ctcagatggt ccttgcctcc gaggatgacc ggttaccagt gatccagatg tgggatcttc
841 gatttgcttc ctctccactt cgtgtcctgg aaaaccatgc cagggggatt ttggcaattg
901 cttggagcat ggcagatcct gaattgttac tgagctgtgg aaaagatgct aagattctct
961 gctccaatcc aaacacagga gaggtgttat atgaacttcc caccaacaca cagtggtgct
1021 tcgatattca gtggtgtccc cgaaatcctg ctgtcttatc agctgcttcg tttgatgggc
1081 gtatcagtgt ttattctatc atgggaggaa gcacagatgg tttaagacag aaacaagttg
1141 acaagctttc atcatctttt gggaatcttg atccctttgg cacaggacag ccccttcctc
1201 cgttacaaat tccacagcag actgctcagc atagtatagt gctgcctctg aagaagccgc
1261 ccaagtggat tcgaaggcct gttggtgctt ctttttcatt tggaggcaaa ctggttacgt
1321 ttgagaatgt cagaatgcct tctcatcagg gagctgagca gcagcagcag cagcaccatg
1381 tgttcattag tcaggttgta acagaaaagg agttcctcag ccgatcagac caacttcagc
1441 aggctgtgca gtcacaagga tttatcaatt attgccaaaa aaaaattgat gcttctcaga
1501 ctgaatttga gaaaaatgtg tggtcctttt tgaaggtaaa ctttgaggat gattctcgtg
1561 gaaaatacct tgaacttcta ggatacagaa aagaagatct aggaaagaag gtaaactttt
1621 gggaaagtta gatggcatgc tctttatgaa tcatactttt aaaaaataaa gttctacaca
1681 gattatctca aatcacccaa taaacattta ataataaaaa aaaaaaaaaa aa
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