LOCUS BC047878 3249 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens NFKB repressing factor, mRNA (cDNA clone MGC:57593
IMAGE:5228666), complete cds.
ACCESSION BC047878
VERSION BC047878.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3249)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3249)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Jun 23, 2004 this sequence version replaced BC047878.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63003896.
FEATURES Location/Qualifiers
source 1..3249
/db_xref="H-InvDB:HIT000098811"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57593 IMAGE:5228666"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3249
/gene="NKRF"
/gene_synonym="ITBA4"
/gene_synonym="NRF"
/db_xref="GeneID:55922"
/db_xref="HGNC:HGNC:19374"
/db_xref="MIM:300440"
CDS 137..2209
/gene="NKRF"
/gene_synonym="ITBA4"
/gene_synonym="NRF"
/codon_start=1
/product="NFKB repressing factor"
/protein_id="AAH47878.1"
/db_xref="GeneID:55922"
/db_xref="HGNC:HGNC:19374"
/db_xref="MIM:300440"
/translation="MEKILQMAEGIDIGEMPSYDLVLSKPSKGQKRHLSTCDGQNPPK
KQAGSKFHARPRFEPVHFVASSSKDERQEDPYGPQTKEVNEQTHFASMPRDIYQDYTQ
DSFSIQDGNSQYCDSSGFILTKDQPVTANMYFDSGNPAPSTTSQQANSQSTPEPSPSQ
TFPESVVAEKQYFIEKLTATIWKNLSNPEMTSGSDKINYTYMLTRCIQACKTNPEYIY
APLKEIPPADIPKNKKLLTDGYACEVRCQNIYLTTGYAGSKNGSRDRATELAVKLLQK
RIEVRVVRRKFKHTFGEDLVVCQIGMSSYEFPPALKPPEDLVVLGKDASGQPIFNASA
KHWTNFVITENANDAIGILNNSASFNKMSIEYKYEMMPNRTWRCRVFLQDHCLAEGYG
TKKTSKHAAADEALKILQKTQPTYPSVKSSQCHTGSSPRGSGKKKDIKDLVVYENSSN
PVCTLNDTAQFNRMTVEYVYERMTGLRWKCKVILESEVIAEAVGVKKTVKYEAAGEAV
KTLKKTQPTVINNLKKGAVEDVISRNEIQGRSAEEAYKQQIKEDNIGNQLLRKMGWTG
GGLGKSGEGIREPISVKEQHKREGLGLDVERVNKIAKRDIEQIIRNYARSESHTDLTF
SRELTNDERKQIHQIAQKYGLKSKSHGVGHDRYLVVGRKRRKEDLLDQLKQEGQVGHY
ELVMPQAN"
BASE COUNT 1055 a 631 c 691 g 872 t
ORIGIN
1 gcagtgggct ctgcggcgca gcttcatctg tcggcacctg cacagctatc ccggggctgc
61 cctcgaccag ctcctcgcgc tctccgccgc ctggaccaac cacgtcttcc tgggctgcag
121 gtacagccca cgcttgatgg aaaaaattct ccaaatggct gaaggtattg atattgggga
181 gatgccttca tatgatctgg tgctgtccaa accttccaaa ggtcaaaaac gccacctctc
241 aacatgtgat ggtcaaaatc ctcctaaaaa gcaagccggt tccaaattcc atgcgagacc
301 tcgttttgag cctgtacatt ttgtagctag tagttcaaaa gatgaaagac aggaagatcc
361 ttatggccct caaacaaaag aggtaaatga acaaacacat tttgccagca tgccaagaga
421 catctaccaa gattatactc aagactcttt cagtatacaa gatgggaatt ctcagtattg
481 tgattcatca ggattcattc tcacaaaaga ccagcctgta acagccaaca tgtattttga
541 cagtgggaac cctgccccaa gcaccacatc acagcaggca aactctcagt caactcctga
601 gccttcacca tcacagacat ttcccgagtc tgtggtagcc gagaagcagt attttattga
661 aaaattaacg gcgacaatct ggaagaacct ttctaatcca gaaatgactt ctggatctga
721 taaaattaat tatacatata tgttaactcg ttgtattcag gcgtgtaaga caaatcctga
781 gtatatatat gctcctttaa aggaaattcc tcctgccgac atccccaaaa ataaaaaact
841 tctaactgat ggctatgctt gtgaagttag atgccaaaat atctacttaa ctacaggtta
901 tgctggcagc aagaatgggt ccagggatcg agctacagag ctagctgtaa aactcttgca
961 gaaacgtatt gaagttagag ttgtccggcg gaaattcaag catacatttg gagaggacct
1021 cgtggtgtgt cagattggca tgtcctccta tgaatttcct ccagctctga agccaccaga
1081 agacctggtg gtgctgggta aagatgcttc cgggcagcca atttttaatg cttctgccaa
1141 acactggacc aattttgtca ttacagaaaa tgcaaatgat gcaattggta tccttaacaa
1201 ttctgcctca ttcaacaaga tgtcaattga atacaaatat gagatgatgc caaatcgcac
1261 atggcgttgt cgagtgtttt tacaagatca ctgcttagct gaaggttatg gaaccaagaa
1321 aacaagtaaa catgcagctg ccgacgaggc tttgaaaatt cttcaaaaaa cacagcccac
1381 ttatccatct gtcaaaagtt cacaatgcca tacaggctct tcacccagag gatctggaaa
1441 gaagaaagat ataaaggatc ttgtagttta tgagaattct tcaaatcccg tgtgcacgct
1501 gaacgacaca gctcagttta accgaatgac agttgagtat gtctatgaaa ggatgacagg
1561 cctccgctgg aaatgcaaag tgattctaga gagtgaagta attgcagaag cagttggggt
1621 gaagaaaact gtcaaatatg aagctgctgg ggaagctgtg aaaaccctca aaaagaccca
1681 gccaactgtc attaacaact tgaagaaagg agctgttgaa gatgtgattt caagaaatga
1741 aattcagggc cgctcagcag aggaggctta caaacagcaa atcaaagaag ataatattgg
1801 aaatcagctg ctgagaaaga tgggttggac tggtggtggt ttaggtaaat ctggtgaggg
1861 catacgggag cctatctcag tgaaagagca gcataagcgg gaagggcttg gtctggatgt
1921 agagagggtg aataaaattg ccaagagaga tattgaacag atcatcagaa actacgcccg
1981 ctccgagagc cacacagatt tgactttctc tagagagctg actaatgatg aacggaagca
2041 aatacatcag attgcccaga agtatggtct taagagtaag tctcatgggg tgggccatga
2101 taggtaccta gtggtaggta gaaaaagacg gaaggaagac ctactagatc agctcaaaca
2161 ggaaggccaa gtgggccatt acgagcttgt tatgcctcaa gcaaattgag atcttactaa
2221 tttattttgt aaatgcctaa tgaggcagat ttttgaatta aagaaatgct acatgttccg
2281 gttgcagagt atattcataa gatgtctcac cttgttcatt tcacatagtg gtttattaga
2341 tattggaacc taaagaattc tgtccacttg tattagctta atccagcaga tgatattgtg
2401 cagttactgt ttgtgtcttt gatattgctg tgtccctcag attttagtag tttgacaagc
2461 aagaacacat atccaaatgg aattttaccc tgagaaatta tcattttaaa gggcatagca
2521 cagcaatctg caacaatatg taaagttgat attgactaca ataaaaatcc agtcttaatt
2581 ccagatttac tgaaaatgtc agatcatttt gtattaatct attttcatct ttgtgtgaag
2641 ccagttatag aatgtttgac aataaattgt gctgtacacg taaatgtcct taccaactaa
2701 atgatgtaaa actttcttaa agtaatttta gtgttcattt atttataact tctaccatgt
2761 gatttccaga ctattggaag tgatttactg tatcttgtga tatatgggtt ttaacaaatt
2821 ctagtcttca cgctgagaga gcactacttg agagagcagt tgaaagtttc aaaaactttg
2881 gttcaatctg aagaaaggaa gcttgaactg tttgttcttg gtgccttgca gagagactca
2941 cagcaactct ccattatagc tttcacacgg tttggatgtg cagcacatcc aaggcaacca
3001 cagctgtggt agagcttggt aaaagactga agatacattg gtgctttgat gaaaaggtca
3061 gttggctggt ccctctctca aaaagcttat taagcctgaa aagccaactt tgtaacatat
3121 ttaaaactgc tattttcgct tatttctgga atgtaaaaaa aaaaaatgta taaaaagaat
3181 tagtgtatgc ttcctgaata aaaaggagcc aaagttgaaa aaaaaaaaaa aaaaaaaaaa
3241 aaaaaaaaa
//