LOCUS BC047869 2321 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens cytochrome c oxidase subunit IV isoform 1, mRNA (cDNA
clone IMAGE:5240622), complete cds.
ACCESSION BC047869
VERSION BC047869.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2321)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2321)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17017985
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2321
/db_xref="H-InvDB:HIT000053261"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5240622"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2321
/gene="COX4I1"
/gene_synonym="COX4"
/gene_synonym="COXIV"
/db_xref="GeneID:1327"
/db_xref="MIM:123864"
CDS 133..384
/gene="COX4I1"
/gene_synonym="COX4"
/gene_synonym="COXIV"
/codon_start=1
/product="COX4I1 protein"
/protein_id="AAH47869.1"
/db_xref="GeneID:1327"
/db_xref="MIM:123864"
/translation="MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDH
PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVECGY"
misc_feature 208..372
/gene="COX4I1"
/gene_synonym="COX4"
/gene_synonym="COXIV"
/note="Region: pfam02936, COX4, Cytochrome c oxidase
subunit IV. Cytochrome c oxidase, a 13 sub-unit complex,
EC:1.9.3.1 is the terminal oxidase in the mitochondrial
electron transport chain. This family is composed of
cytochrome c oxidase subunit IV. The Dictyostelium member
of this family is called COX VI. The yeast protein appears
to be the yeast COX IV subunit"
/db_xref="CDD:pfam02936"
BASE COUNT 543 a 519 c 652 g 607 t
ORIGIN
1 cggtgacctc cgtgcggccg ggtgcgggcg gagtcttcct cgatcccgtg gtgctccgcg
61 gcgcggcctt gctctcttcc ggtcgcggga caccgggtgt agagggcggt cgcggcgggc
121 agtggcggca gaatgttggc taccagggta tttagcctag ttggcaagcg agcaatttcc
181 acctctgtgt gtgtacgagc tcatgaaagt gttgtgaaga gcgaagactt ttcgctccca
241 gcttatatgg atcggcgtga ccaccccttg ccggaggtgg cccatgtcaa gcacctgtct
301 gccagccaga aggcactgaa ggagaaggag aaggcctcct ggagcagcct ctccatggat
361 gagaaagtcg agtgtgggta ttgaagggac ccacaggcgc gcccagcagc tctcggaagc
421 gtgtgtgtga cagagcctct gctcacttct gggcctactg tctagagagc agtcttgcac
481 aggagggttg ctctgctggg tttcggggtc actgtgccag ggccccagtt tatgtgctca
541 ccagtcactt agctctgcca gctgacagga tcttttgctg ggcccccttc tctgtgctga
601 gtggaggtag cctctcagca tatctgctgg gtaagacata gttaactgta aattattgaa
661 agaaactcag caaaatgcat agtgtttggt atgaaagggg cagaaaaata acaagattaa
721 atagacccta atactgtaat tcaagtaaga aataattttg cagttttaat ttgcacctga
781 agcgaactgt atgcattttc ttccttcctt gccctgtcac atgcctgcgt gggcacgtgt
841 gtgcacgtat gtgcgtgaac atgatgtggc ctggcttggt gtatccttca gctctgtgtt
901 tcctccttca caagtgtggt tttggggaga agtggttgaa tgttgcagag gagggagctg
961 ctgacctttg tgcctgtaaa tggctgtcct ctctgccccc agtgtatcgc attaagttca
1021 aggagagctt tgctgagatg aacaggggct cgaacgagtg gaagacggtt gtgggcggtg
1081 ccatgttctt catcggtttc accgcgctcg ttatcatgtg gcagaagcac tatggtgagt
1141 agagagggag gaaggcatgg gcgcctggac tggggctcca gcctgcagtg cccattggtg
1201 ggctgtgggg gacctccata ccttgaggct atgagatagg gactgcattc cagagttcat
1261 ctcaggattg tttccaggcc ttggtgacct ggagaactga agtcgtggga ggttagttta
1321 taagccagca tctgattatt catagccatg cttgttgggt ggtgaaatac cctaactact
1381 ttgtacagca caccacgttt tcagtagcaa tttatgtgct caccagtcac ttagcaaaag
1441 atgacttcgt gaaggttcga gcaaggataa ggggactcat tcatttaatg actgtctcga
1501 ctgttgtgag gactgcatct caacagccag catctggggg tcccgacctg atagtttgtg
1561 tgtgggcatt gccgggttgc tcgctcgtgg taatgactct tccccgaggt tctttctgtc
1621 caggcagaac aggcattttt ccattctgaa taggtatatt ctcgtacttt tggtttgaat
1681 gtggatgtgg gttaataacg acccgaatct atttgatctt ccaggtcacc ttgggctctg
1741 tttgtcagat cctgttatcc atagccttta gagaggacct tctgctttta gcttattttg
1801 ttgctaactt tttacaaaca aagggctaat tttaaaatgt cagtgttgtc agtggtcaga
1861 aaccgtgtgt ttgagcgggt gttgagtggc aggtggctct gctgacctgg tggctggtgt
1921 gtcgggagga tttaacctgt gtgagggatt ggcctagaaa caacctgttg agatagtctt
1981 gccccataac ctgtctcaca ccgtagtgta cggccccctc ccgcaaagct ttgacaaaga
2041 gtgggtggcc aagcagacca agaggatgct ggacatgaag gtgaacccca tccagggctt
2101 agcctccaag tgggactacg aaaagaacga gtggaagaag tgagagatgc tggcctgcgc
2161 ctgcacctgc gcctggctct gtcaccgcca tgcaactcca tgcctattta ctggaaacct
2221 gttatgccaa acagttgtac cactgctaat aaatgaccag tttacctgaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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