LOCUS BC047864 3083 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein L, 6, mRNA (cDNA clone MGC:57495
IMAGE:5498605), complete cds.
ACCESSION BC047864
VERSION BC047864.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3083)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3083)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22035660.
FEATURES Location/Qualifiers
source 1..3083
/db_xref="H-InvDB:HIT000053257"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57495 IMAGE:5498605"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3083
/gene="APOL6"
/gene_synonym="APOL-VI"
/db_xref="GeneID:80830"
/db_xref="HGNC:HGNC:14870"
/db_xref="MIM:607256"
CDS 277..1308
/gene="APOL6"
/gene_synonym="APOL-VI"
/codon_start=1
/product="apolipoprotein L, 6"
/protein_id="AAH47864.1"
/db_xref="GeneID:80830"
/db_xref="HGNC:HGNC:14870"
/db_xref="MIM:607256"
/translation="MDNQAERESEAGVGLQRDEDDAPLCEDVELQDGDLSPEEKIFLR
EFPRLKEDLKGNIDKLRALADDIDKTHKKFTKANMVATSTAVISGVMSLLGLALAPAT
GGGSLLLSTAGQGLATAAGVTSIVSGTLERSKNKEAQARAEDILPTYDQEDREDEEEK
ADYVTAAGKIIYNLRNTLKYAKKNVRAFWKLRANPRLANATKRLLTTGQVSSRSRVQV
QKAFAGTTLAMTKNARVLGGVMSAFSLGYDLATLSKEWKHLKEGARTKFAEELRAKAL
ELERKLTELTQLYKSLQQKVRSRARGVGKDLTGTCETEAYWKELREHVWMWLWLCVCL
CVCVYVQFT"
BASE COUNT 850 a 722 c 798 g 713 t
ORIGIN
1 gaagagccct agagctttgc tttttctctc ctgcagcact taaccgaaac cagttttgca
61 atcaattcct gttcaaaggc caccctactc ttcctatccg tctttctcca gcccagacac
121 tcacagcccc ctgccagacc aggggacctc ggagaggcaa ggacagaggt tcaggatctt
181 cctctccctc gggacccaag gccacaaagg agagctccgt ggagagaaga aaatcatttg
241 actcctgggg acacagattt gctgccacag aggctgatgg acaaccaggc ggagagagaa
301 agtgaggctg gtgttggttt gcaaagggat gaggatgacg ctcctctgtg tgaagacgtg
361 gagctacaag acggagatct gtcccccgaa gaaaaaatat ttttgagaga atttcccaga
421 ttgaaagaag atctgaaagg gaacattgac aagctccgtg ccctcgcaga cgatattgac
481 aaaacccaca agaaattcac caaggctaac atggtggcca cctctactgc tgtcatctct
541 ggagtgatga gcctcctggg tttagccctt gccccagcaa caggaggagg aagcctgctg
601 ctctccaccg ctggtcaagg tttggcaaca gcagctgggg tcaccagcat cgtgagtggt
661 acgttggaac gctccaaaaa taaagaagcc caagcacggg cggaagacat actgcccacc
721 tacgaccaag aggacaggga ggatgaggaa gagaaggcag actatgtcac agctgctgga
781 aagattatct ataatcttag aaacaccttg aagtatgcca agaaaaacgt ccgtgcattt
841 tggaaactca gagccaaccc acgcttggcc aatgctacca agcgtcttct gaccactggc
901 caagtctcct cccggagccg cgtgcaggtg caaaaggcct ttgcgggaac aacactggcg
961 atgaccaaaa atgctcgcgt gctgggaggt gtgatgtccg ccttctccct tggctatgac
1021 ttggccactc tctcaaagga atggaagcac ctgaaggaag gagcaaggac aaagtttgcg
1081 gaagagttga gagccaaggc cttggagctg gagaggaaac tcacagaact cacccagctc
1141 tacaagagct tgcagcagaa agtgaggtca agggccagag gggtggggaa ggatttaact
1201 gggacctgcg aaaccgaggc ttactggaag gagttaaggg agcatgtgtg gatgtggctg
1261 tggctgtgtg tgtgtctgtg tgtctgtgtg tatgtacagt ttacatgaat gttcctcagg
1321 acatggcata caatggcctt ggaggtccaa ataatatcaa gtacatcttg gagatgaggg
1381 tgcctgtcct ggacagacct cggcatgcct tctgtttctc cttcaatgct ccttaaggcc
1441 tatgtgctgg gaaaagggtc ttccctgttt gtttgtttgt ttgtttgttt gtttgttttg
1501 agacagggtc tctgttgccc aggctggagt gcagtggcgt aatctcggct cactgcaacc
1561 tctgcctcct gagtgcaagc aagtctcctg cctcagcctc ccaagtagct gggattacag
1621 gcacgcacca ccacgcccag ctaattttgg tatttttttg tagagacagg gtttcaccat
1681 tttggccagg ctggtctcga attcctgacc tcaagtgatc cacccacctt ggcctcccaa
1741 aatgctggga ttacaagcgt gagctaccct gcccagccgg gtcttcccag ttttaacaaa
1801 gaggtcacag agccacaggc ggagttagga actaaattgt ctcctcctcc caattcatat
1861 gttgaagtcc taaaccaaaa tgtggctgta tttagagatg gaccctttgg gaggtaatta
1921 gggttgactg aggccatagg gtgaggtcct aacccgatgg aattgacttc tttataagag
1981 gaggaggaaa tacaagaggg cctccccacc cctgctgcac acctacactg aaggaaggct
2041 atttgcagat gcagcaagaa ggcagccatc tgcaaggcag aagaagagag ccctcaccag
2101 gaactgaata agtcagtcag tctgggactt ccagcctcta gaactgtgaa acaatagatt
2161 tctgtggtgt aagcaactca atctatagta gtttgttact attttgttat agcaaccaaa
2221 gatgactaag ccagacaggt tatgtcactc gccaagtgtc ttggtctgtt tgtgctgcta
2281 taacaaaata ccttagactg ggtaatttac aaacaacaga gatgtatcca gagatccaca
2341 gttctggagg ctgagaagtc taaaatcaag gcaccagcag attccacatc tcgtgaaggc
2401 tcactctctg cttcacagat ggcactgtct tgctgtgttc tcacatggca gaaggggcaa
2461 acaagccccc ctgggcctct tttataaagg cactaactct atgcctaaag gcagggccct
2521 catgactcta tcacctacca aaaggctcca cttctttata ctattggagg ggtagaagga
2581 acttcctttc tagaccttga aggtttaaga atttgaatct ataaaacaag ctgacaatag
2641 acagattaac aggagaaaaa gcatatacat tttttaatgt gggccagatg gcagaagctt
2701 aaataacacc ccaagctaca ggaagtgagg cctctgatgg ggaggtagtg acacaggctg
2761 tgggaggggg taggggagga agtctgtggt gagcaaagtt tgccttatta cactgataaa
2821 gtgtaattac actaataaag ctggatcacc tgaggttagg agtttgagaa cagcctggcc
2881 aacatggcaa aaccctgtct ctactataaa tacaaaaatt agccaggtgt agtggcaggg
2941 cacttgtaat cctatctact cgggaggctg aggcaggaga atcgcttgaa cccaggctgt
3001 aaaggttgca gtgagccaag atcatgccac tgcactccag tctgggtgtc agaatgagac
3061 cccatctcaa aaaaaaaaaa aaa
//