LOCUS BC047750 2014 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear receptor subfamily 1, group H, member 2, mRNA
(cDNA clone MGC:54144 IMAGE:6469687), complete cds.
ACCESSION BC047750
VERSION BC047750.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2014)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2014)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC047750.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56699414.
FEATURES Location/Qualifiers
source 1..2014
/db_xref="H-InvDB:HIT000053235"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:54144 IMAGE:6469687"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2014
/gene="NR1H2"
/gene_synonym="LXR-b"
/gene_synonym="LXRB"
/gene_synonym="NER"
/gene_synonym="NER-I"
/gene_synonym="RIP15"
/db_xref="GeneID:7376"
/db_xref="HGNC:HGNC:7965"
/db_xref="MIM:600380"
CDS 236..1621
/gene="NR1H2"
/gene_synonym="LXR-b"
/gene_synonym="LXRB"
/gene_synonym="NER"
/gene_synonym="NER-I"
/gene_synonym="RIP15"
/codon_start=1
/product="nuclear receptor subfamily 1, group H, member 2"
/protein_id="AAH47750.1"
/db_xref="GeneID:7376"
/db_xref="HGNC:HGNC:7965"
/db_xref="MIM:600380"
/translation="MSSPTTSSLDTPLPGNGPPQPGAPSSSPTVKEEGPEPWPGGPDP
DVPGTDEASSACSTDWVIPDPEEEPERKRKKGPAPKMLGHELCRVCGDKASGFHYNVL
SCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVL
SEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGV
QLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAI
ISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFT
YSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRV
EALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLP
PLLSEIWDVHE"
BASE COUNT 418 a 646 c 615 g 335 t
ORIGIN
1 cggggttgcc ggaagaagtg gcgaagttac ttttgagggt atttgagtag cggcggtgtg
61 tcaggggcta aagaggagga cgaagaaaag cagagcaagg gaacccaggg caacaggagt
121 agttcactcc gcgagaggcc gtccacgaga cccccgcgcg cagccatgag ccccgccccc
181 cgctgttgct tggagagggg cgggacctgg agagaggctg ctccgtgacc ccaccatgtc
241 ctctcctacc acgagttccc tggatacccc cctgcctgga aatggccccc ctcagcctgg
301 cgccccttct tcttcaccca ctgtaaagga ggagggtccg gagccgtggc ccgggggtcc
361 ggaccctgat gtcccaggca ctgatgaggc cagctcagcc tgcagcacag actgggtcat
421 cccagatccc gaagaggaac cagagcgcaa gcgaaagaag ggcccagccc cgaagatgct
481 gggccacgag ctttgccgtg tctgtgggga caaggcctcc ggcttccact acaacgtgct
541 cagctgcgaa ggctgcaagg gcttcttccg gcgcagtgtg gtccgtggtg gggccaggcg
601 ctatgcctgc cggggtggcg gaacctgcca gatggacgct ttcatgcggc gcaagtgcca
661 gcagtgccgg ctgcgcaagt gcaaggaggc agggatgagg gagcagtgcg tcctttctga
721 agaacagatc cggaagaaga agattcggaa acaacagcag caggagtcac agtcacagtc
781 gcagtcacct gtggggccgc agggcagcag cagctcagcc tctgggcctg gggcttcccc
841 tggtggatct gaggcaggca gccagggctc cggggaaggc gagggtgtcc agctaacagc
901 ggctcaagaa ctaatgatcc agcagttggt ggcggcccaa ctgcagtgca acaaacgctc
961 cttctccgac cagcccaaag tcacgccctg gcccctgggc gcagaccccc agtcccgaga
1021 tgcccgccag caacgctttg cccacttcac ggagctggcc atcatctcag tccaggagat
1081 cgtggacttc gctaagcaag tgcctggttt cctgcagctg ggccgggagg accagatcgc
1141 cctcctgaag gcatccacta tcgagatcat gctgctagag acagccaggc gctacaacca
1201 cgagacagag tgtatcacct tcttgaagga cttcacctac agcaaggacg acttccaccg
1261 tgcaggcctg caggtggagt tcatcaaccc catcttcgag ttctcgcggg ccatgcggcg
1321 gctgggcctg gacgacgctg agtacgccct gctcatcgcc atcaacatct tctcggccga
1381 ccggcccaac gtgcaggagc cgggccgcgt ggaggcgttg cagcagccct acgtggaggc
1441 gctgctgtcc tacacgcgca tcaagaggcc gcaggaccag ctgcgcttcc cgcgcatgct
1501 catgaagctg gtgagcctgc gcacgctgag ctctgtgcac tcggagcagg tcttcgcctt
1561 gcggctccag gacaagaagc tgccgcctct gctgtcggag atctgggacg tccacgagtg
1621 aggggctggc cacccagccc cacagccttg cctgaccacc ctccagcaga tagacgccgg
1681 caccccttcc tcttcctagg gtggaagggg ccctgggccg agcctgtaga cctatcggct
1741 ctcatccctt gggataagcc ccagtccagg tccaggaggc tccctccctg cccagcgagt
1801 cttccagaag gggtgaaagg gttgcaggtc ccgaccactg acccttcccg gctgccctcc
1861 ctccccagct tacacctcaa gcccagcacg cagtgcacct tgaacagagg gaggggagga
1921 cccatggctc tcccccctag cccgggagac caggggcctt cctcttcctc tgcttttatt
1981 taataaaaac taaaaacaga aaaaaaaaaa aaaa
//