LOCUS BC047746 1144 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 1 (GalNAc-T1), mRNA (cDNA clone
IMAGE:6187456), complete cds.
ACCESSION BC047746
VERSION BC047746.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1144)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1144)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 98 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13124890
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1144
/db_xref="H-InvDB:HIT000053233"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6187456"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1144
/gene="GALNT1"
/gene_synonym="GALNAC-T1"
/db_xref="GeneID:2589"
/db_xref="MIM:602273"
CDS 90..407
/gene="GALNT1"
/gene_synonym="GALNAC-T1"
/codon_start=1
/product="GALNT1 protein"
/protein_id="AAH47746.1"
/db_xref="GeneID:2589"
/db_xref="MIM:602273"
/translation="MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDEKKERGLPA
GDVLEPVQKPHEGPGEMGKPVVIPKEDQEKMKEMFKINQFNLMASEMIALNRSLPDVR
LEG"
BASE COUNT 380 a 178 c 191 g 395 t
ORIGIN
1 atttctgatg aaactggatt ggaataattt tcatgatctt tgtatatata tatatatatt
61 tttaaatttt gcatttgact taaagtgcca tgagaaaatt tgcatactgc aaggtggtcc
121 tagccacctc cttgatttgg gtactcttgg atatgttcct gctgctttac ttcagtgaat
181 gcaacaaatg tgatgaaaaa aaggagagag gacttcctgc tggagatgtt ctagagccag
241 tacaaaagcc tcatgaaggt cctggagaaa tggggaaacc agtcgtcatt cctaaagagg
301 atcaagaaaa gatgaaagag atgtttaaaa tcaatcagtt caatttaatg gcaagtgaga
361 tgattgcact caacagatct ttaccagatg ttaggttaga agggtaagta cttactgtgg
421 tcctgatagt atgtgaatga aaagtatatt ctgaattttc agtaaattgc acttgagtgc
481 tgattgttct taaggcaaat gttatatcac tatgttacta cttaccccac ttagaaaata
541 attaaatgct gatagaaata atatctcaag cttctactga ttattagcac tatgtatttc
601 aggcattgga agataattat ttatcttaat ggattagaag gggattttaa actttattat
661 taccaaaata ctcacatact caacttttta caaaaagatt taagttgtat gtaacttgaa
721 acagtgaaat acacagtcgt aagtatacag ctcactgaat tttttgctat gtatacacct
781 gtgtaaccat cagccaaatc aagacataga atgatcccat cacccctgaa agtctcctta
841 tgttttttgt agtcattact tacatcccca gaggcagccg ttatattgac ctctctaaac
901 atagattagt tttgtctctt tttgaacttt ttatgatgga tccacaccat tttttgtgcc
961 tttaagattc atattgttgc atgtatcaga attttattct tttctactgc aaatagtgat
1021 ttgtaatatg aatatgccat tgtttattta tacattgata gacctttgga ttatttctac
1081 tttttgaccc ctataaataa agctattgtg acattcttaa aaaaaaaaaa aaaaaaaaaa
1141 aaaa
//