LOCUS BC047618 3241 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group), mRNA (cDNA clone MGC:50980 IMAGE:5259171), complete cds. ACCESSION BC047618 VERSION BC047618.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3241) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3241) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 90 Row: l Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 15451878. FEATURES Location/Qualifiers source 1..3241 /db_xref="H-InvDB:HIT000053184" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:50980 IMAGE:5259171" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3241 /gene="B3GALNT1" /gene_synonym="beta3Gal-T3" /gene_synonym="galT3" /gene_synonym="Gb4Cer" /gene_synonym="GLCT3" /gene_synonym="GLOB" /gene_synonym="P" /gene_synonym="P1" /db_xref="GeneID:8706" /db_xref="HGNC:HGNC:918" /db_xref="MIM:603094" CDS 342..1337 /gene="B3GALNT1" /gene_synonym="beta3Gal-T3" /gene_synonym="galT3" /gene_synonym="Gb4Cer" /gene_synonym="GLCT3" /gene_synonym="GLOB" /gene_synonym="P" /gene_synonym="P1" /codon_start=1 /product="beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group)" /protein_id="AAH47618.1" /db_xref="GeneID:8706" /db_xref="HGNC:HGNC:918" /db_xref="MIM:603094" /translation="MASALWTVLPSRMSLRSLKWSLLLLSLLSFFVMWYLSLPHYNVI ERVNWMYFYEYEPIYRQDFHFTLREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWG EKKSWWGYEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTI MAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGF YQKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYEMMGHVKPIKFEDVYVGICLNL LKVNIHIPEDTNLFFLYRIHLDVCQLRRVIAAHGFSSKEIITFWQVMLRNTTCHY" BASE COUNT 996 a 553 c 641 g 1051 t ORIGIN 1 gcttccgagc tgggtgcgcg ccgagcacag gagattgcct gcgtttagga ggtggctgcg 61 ttgtgggaaa agctatcaag gaagaaattg ccaaaccatg tctttttttc tgttttcaga 121 gtagttcaca acagatctga gtgttttaat taagcatgga atacagaaaa caacaaaaaa 181 cttaagcttt aatttcatct ggaattccac agttttctta gctccctgga cccggttgac 241 ctgttggctc ttcccgctgg ctgctctatc acgtggtgct ctccgactac tcaccccgag 301 tgtaaagaac cttcggctcg cgtgcttctg agctgctgtg gatggcctcg gctctctgga 361 ctgtccttcc gagtaggatg tcactgagat ccctcaaatg gagcctcctg ctgctgtcac 421 tcctgagttt ctttgtgatg tggtacctca gccttcccca ctacaatgtg atagaacgcg 481 tgaactggat gtacttctat gagtatgagc cgatttacag acaagacttt cacttcacac 541 ttcgagagca ttcaaactgc tctcatcaaa atccatttct ggtcattctg gtgacctccc 601 acccttcaga tgtgaaagcc aggcaggcca ttagagttac ttggggtgaa aaaaagtctt 661 ggtggggata tgaggttctt acatttttct tattaggcca agaggctgaa aaggaagaca 721 aaatgttggc attgtcctta gaggatgaac accttcttta tggtgacata atccgacaag 781 attttttaga cacatataat aacctgacct tgaaaaccat tatggcattc aggtgggtaa 841 ctgagttttg ccccaatgcc aagtacgtaa tgaagacaga cactgatgtt ttcatcaata 901 ctggcaattt agtgaagtat cttttaaacc taaaccactc agagaagttt ttcacaggtt 961 atcctctaat tgataattat tcctatagag gattttacca aaaaacccat atttcttacc 1021 aggagtatcc tttcaaggtg ttccctccat actgcagtgg gttgggttat ataatgtcca 1081 gagatttggt gccaaggatc tatgaaatga tgggtcacgt aaaacccatc aagtttgaag 1141 atgtttatgt cgggatctgt ttgaatttat taaaagtgaa cattcatatt ccagaagaca 1201 caaatctttt ctttctatat agaatccatt tggatgtctg tcaactgaga cgtgtgattg 1261 cagcccatgg cttttcttcc aaggagatca tcactttttg gcaggtcatg ctaaggaaca 1321 ccacatgcca ttattaactt cacattctac aaaaagccta gaaggacagg atactttgtg 1381 gaaagtgtta aataaagtag gtactgtgga aaattcatgg ggaggtcagt gtgctggctt 1441 acactgaact gaaactcatg aaaaacccag actggagact ggagggttac acttgtgatt 1501 tattagtcag gcccttcaaa gatgatatgt ggaggaatta aatataaagg aattggaggt 1561 ttttgctaaa gaaattaata ggaccaaaca atttggacat gtcattctgt agactagaat 1621 ttcttaaaaa ggtgttactg agttataagc tcactaggct gtaaaaacaa aacaatgtag 1681 agttttattt attgaacaat gtagtcactt gaaggttttg tgtatatctt atgtggatta 1741 ccaatttaaa aatatatgta gttctgtgtc aaaaaacttc ttcactgaag ttatactgaa 1801 caaaatttta cctgtttttg gtcatttata aagtacttca agatgttgca gtatttcaca 1861 gttattatta tttaaaatta cttcaacttt gtgtttttaa atgttttgac gatttcaata 1921 caagataaaa aggatagtga atcattcttt acatgcaaac attttccagt tacttaactg 1981 atcagtttat tattgataca tcactccatt aatgtaaagt cataggtcat tattgcatat 2041 cagtaatctc ttggactttg ttaaatattt tactgtggta atatagagaa gaattaaagc 2101 aagaaaatct gaagtattgt cttgttttta aaaaatacag ttcctagtgt ttttagaagt 2161 cacttaattt gtctcatttt tccacctgga aattaggaat aatgtagaat gcaaggcagt 2221 aatttcgttt tggaaaggac tctgaaggca gaaaagaagg gagagaacct catgggcaga 2281 atattataaa aagagtgtca tattccagca tttgaattgg aaagagaaga gtgaagatcc 2341 aagttgcatt attaatctgc cctgtgtttt ttccttttaa caatcagttt gagctgctgc 2401 tgttatgagt ttctcatcaa gatgaaagcc ctaatatgta aagtcaaatc cgatttaaat 2461 tttgtgcttt tatagaaaga aatttcttca tagacgtggt gatatatcat ttgttggacc 2521 tgctaatagt aggtcaaagg ggagcactcc ttgccccctg ttcctgggtt tatgcagttt 2581 tctttttaga gtttatatag ggcaagtggt tctttttctc tgaattacag gatggaaaaa 2641 ggtcatatcc tttgtcagga aatataaact tgaaagtatg tagtcagctc ttgtaatact 2701 catatttatg attgtcctat atgaaaaaca acttcagtta aaactataat gtgtgattct 2761 gtataacaag gtgatgtctg tttcccaggg ctcagaccta atccagttat aataaaatca 2821 attaaatgaa atattctata gaatcgatct atgcccttgt taatctccat ccatatagga 2881 gtcacgttct ttaagacaga tggtggtagt tatttttgtg gcatggttag atttgactgg 2941 ttttgcagaa gattacagtt atgtactgca taatgacata tacaatagtg gtcccataaa 3001 attataatgg agcagaaaat ctattgcctc atgatgtttt agccgtttta atgtcatagc 3061 ctagtgcatt actcacgtgt ctgtggagat gctggtgtaa acaaacctac tacactgcca 3121 gttgtataaa agtacagcac attcagttat gtacagtatg taatactgat aatgacaata 3181 aatgacaccg gtttgtgtat ttacttttta taaaaaaaaa aaaagaaaaa aaaaaaaaaa 3241 a //