LOCUS BC047608 4076 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cadherin 12, type 2 (N-cadherin 2), mRNA (cDNA clone
MGC:50597 IMAGE:5751948), complete cds.
ACCESSION BC047608
VERSION BC047608.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4076)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4076)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 88 Row: n Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16445392.
FEATURES Location/Qualifiers
source 1..4076
/db_xref="H-InvDB:HIT000053182"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50597 IMAGE:5751948"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4076
/gene="CDH12"
/gene_synonym="CDHB"
/db_xref="GeneID:1010"
/db_xref="HGNC:HGNC:1751"
/db_xref="MIM:600562"
CDS 793..3177
/gene="CDH12"
/gene_synonym="CDHB"
/codon_start=1
/product="cadherin 12, type 2 (N-cadherin 2)"
/protein_id="AAH47608.1"
/db_xref="GeneID:1010"
/db_xref="HGNC:HGNC:1751"
/db_xref="MIM:600562"
/translation="MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPG
QRSHFQRVKRGWVWNQFFVLEEYVGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVF
TIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKF
LDGPYVATVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVI
RTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHL
KVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKK
PLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTME
VYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGNEGTIATNELLDRE
STAQYNFSIIASKVSNPLLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQ
IVSAADRDLSPAGQQFSFRLSPEAAIKPNFTVRDFRNNTAGIETRRNGYSRRQQELYF
LPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCI
VILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPK
VIEENKIRRDIKPDSLCLPRQRPPMEDNTDIRDFIHQRLQENDVDPTAPPYDSLATYA
YEGSGSVAESLSSIDSLTTEADQDYDYLTDWGPRFKVLADMFGEEESYNPDKVT"
BASE COUNT 1296 a 855 c 873 g 1052 t
ORIGIN
1 taaatgtgga gggagccaca gagaggggtc caggcttttc tgagaagaga ggcagcctct
61 tccaggaaga aagtggtgtc tactggctgc ccggcctgga gaaccttctt tgaatgaaaa
121 cggacaaaat gcaaagcagt gtgttggcac agtgatttgg aaaggggaaa cagaagagaa
181 gggtctcacc ttccgcgcaa ggctgagctg ttggcaccct gctgcggccg tcggtgctgc
241 tgctcctgca gctgcctttt ctgccatcag ctttgttacc taacagcttg gctcttttgg
301 gaaatataga caagctggaa cccaggagca gttgggagtt ttaaagaatg ccagcctttt
361 taaagctttg atgtccagtg ctatagaatc aagttactgt ggaggtcaaa acaatttgag
421 atacataagc tggccttaga aaataaattg cctctaactt acagtgagga gctcaacata
481 acagggaaaa ggagcacagg atgcagctac ttggagggtg ttgattgaaa acttcgatct
541 ccccacccca ttcacggttg atttgacgga tttctcacct tgttcacaga gaaaatttca
601 attaaggccc ctttagatgg aatataatac agcagaagcc ttttcatcaa aaggattaat
661 gcctgcatca tcatttctgc aataaaacaa gaagctaagt ggtggaggcc acagacacct
721 caaacctgga ttccacaatt ctacgttaag tgttggagtt tttattactc tgctgtagga
781 aagcctttgc caatgcttac aaggaactgt ttatccctgc ttctctgggt tctgtttgat
841 ggaggtctcc taacaccact acaaccacag ccacagcaga ctttagccac agagccaaga
901 gaaaatgtta tccatctgcc aggacaacgg tcacatttcc aacgtgttaa acgtggctgg
961 gtatggaatc aattttttgt gctggaagaa tacgtgggct ccgagcctca gtatgtggga
1021 aagctccatt ccgacttaga caagggagag ggcactgtga aatacaccct ctcaggagat
1081 ggcgctggca ccgtttttac cattgatgaa accacagggg acattcatgc aataaggagc
1141 ctagatagag aagagaaacc tttctacact cttcgtgctc aggctgtgga catagaaacc
1201 agaaagcccc tggagcctga atcagaattc atcatcaaag tgcaggatat taatgataat
1261 gagccaaagt ttttggatgg accttatgtt gctactgttc cagaaatgtc tcctgtgggt
1321 gcatatgtac tccaggtcaa ggccacagat gcagatgacc cgacctatgg aaacagtgcc
1381 agagtcgttt acagcattct tcagggacaa ccttatttct ctattgatcc caagacaggt
1441 gttattagaa cagctttgcc aaacatggac agagaagtca aagaacaata tcaagtactc
1501 atccaagcca aggatatggg aggacagctt ggaggattag ccggaacaac aatagtcaac
1561 atcactctca ccgatgtcaa tgacaatcca cctcgattcc ccaaaagcat cttccacttg
1621 aaagttcctg agtcttcccc tattggttca gctattggaa gaataagagc tgtggatcct
1681 gattttggac aaaatgcaga aattgaatac aatattgttc caggagatgg gggaaatttg
1741 tttgacatcg tcacagatga ggatacacaa gagggagtca tcaaattgaa aaagccttta
1801 gattttgaaa caaagaaggc atacactttc aaagttgagg cttccaacct tcaccttgac
1861 caccggtttc actcggcggg ccctttcaaa gacacagcta cggtgaagat cagcgtgctg
1921 gacgtagatg agccaccggt tttcagcaag ccgctctaca ccatggaggt ttatgaagac
1981 actccggtag ggaccatcat tggcgctgtc actgctcaag acctggatgt aggcagcagt
2041 gctgttaggt acttcataga ttggaagagt gatggggaca gctactttac aatagatgga
2101 aatgaaggaa ccatcgccac taatgaatta ctagacagag aaagcactgc gcagtataat
2161 ttctccataa ttgcgagtaa agttagtaac cctttattga ccagcaaagt caatatactg
2221 attaatgtct tagatgtaaa tgaatttcct ccagaaatat ctgtgccata tgagacagcc
2281 gtgtgtgaaa atgccaagcc aggacagata attcagatag tcagtgctgc agaccgagat
2341 ctttcacctg ctgggcaaca attctccttt agattatcac ctgaggctgc tatcaaacca
2401 aattttacag ttcgtgactt cagaaacaac acagcgggga ttgaaacccg aagaaatgga
2461 tacagccgca ggcagcaaga gttgtatttc ctccctgttg taatagaaga cagcagctac
2521 cctgtccaga gcagcacaaa cacaatgact attcgagtct gtagatgtga ctctgatggc
2581 accatcctgt cttgtaatgt ggaagcaatt tttctacctg taggacttag cactggggcg
2641 ttgattgcaa ttctactatg cattgttata ctcttagcca tagttgtact gtatgtagca
2701 ctgcgaaggc agaagaaaaa agacaccctg atgacctcta aagaagacat cagagacaac
2761 gtcatccatt acgatgatga aggaggtggg gaggaagata cccaggcttt cgacatcggg
2821 gctctgagaa acccaaaagt gattgaggag aacaaaattc gcagggatat aaaaccagac
2881 tctctctgtt tacctcgtca gagaccaccc atggaagata acacagacat aagggatttc
2941 attcatcaaa ggctacagga aaatgatgtg gatccaactg ccccaccata cgattcactg
3001 gccacatatg cctacgaagg gagtgggtcc gtggcagagt ccctcagctc tatagactct
3061 ctcaccacag aagccgacca ggactatgac tatctgacag actggggacc ccgctttaaa
3121 gtcttggcag acatgtttgg cgaagaagag agttataacc ctgataaagt cacttaaggg
3181 agtcgtggag gctaaaatac aaccgagagg ggagattttt aaaaaagaaa aagaaacaca
3241 aatattaata gaaatctctc tcacacacac acacacacac aaacacacac acacacacac
3301 tctgggacaa gattcctttg attacctggt ttctagtaag ttactaaatt aatcatattg
3361 tcagttttgg tttattctgc caacaagaga tacatcctat aatgtgtact tgctttgttt
3421 tgttgttttg ttttttcaca atcacactga gacaagctca ggcctattca atacaattta
3481 ctgacatgac aacctagaac gaagatagct atgtggcatc acggtggaag agtgttagat
3541 ttttcttaat ttcactaaag tgcctattga aactcttatc atttaaagtg gtgtacagta
3601 cactctgctg tgatggtatt gcgggattca gagataaaga cataaaacaa agacaccgtc
3661 tttatgtcaa gaagcaatag cgacactctg actctcctca ttccttttga gaacaaaaga
3721 agaacacttt ctgatctcca ccttcttcta attcaaaagg ttttcttttt cttttttaaa
3781 ctgtatgcta aaacgtattt gtttatccta tcctttcaga aaattgaaat aaatatgaaa
3841 atatcaagtt caatatgtaa gtcccaaatt ctagaaacaa tgtttgatct taacattagt
3901 tcacattaaa gctgttcatt aaaatgttac tttcttttcc aaaaaaaaaa gaaagaaaaa
3961 aaagaaaaaa tattcctctt tataaagaga ggcctcaggg ctcaaattac acattaaaat
4021 aaatattggt tttgcttaat attgcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//