LOCUS BC047534 3540 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens cerebellar degeneration-related protein 2-like, mRNA
(cDNA clone MGC:39548 IMAGE:5288296), complete cds.
ACCESSION BC047534
VERSION BC047534.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3540)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3540)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..3540
/db_xref="H-InvDB:HIT000053162"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39548 IMAGE:5288296"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3540
/gene="CDR2L"
/gene_synonym="HUMPPA"
/db_xref="GeneID:30850"
/db_xref="HGNC:HGNC:29999"
CDS 431..1810
/gene="CDR2L"
/gene_synonym="HUMPPA"
/codon_start=1
/product="cerebellar degeneration-related protein 2-like"
/protein_id="AAH47534.1"
/db_xref="GeneID:30850"
/db_xref="HGNC:HGNC:29999"
/translation="MEDFSAEEEESWYDQQDLEQDLHLAAELGKTLLERNKELEGSLQ
QMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLTARDLELTNHRLVLESKAA
QQKIHGLTETIERLQAQVEELQAQVEQLRGLEQLRVLREKRERRRTIHTFPCLKELCT
SPRCKDAFRLHSSSLELGPRPLEQENERLQTLVGALRSQVSQERQRKERAEREYTAVL
QEYSELERQLCEMEACRLRVQELEAELLELQQMKQAKTYLLGPDDHLAEALLAPLTQA
PEADDPQPGRGDDLGAQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRHAGNLTL
HANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSW
RDLRGGEEGQGEVKAGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFSRIQKTKADINA
TKVKTHSSK"
BASE COUNT 681 a 1160 c 1088 g 611 t
ORIGIN
1 aagatgcagc ggcggctccg gttgtcgccg ggcgggccag gagcagcgcg gacccgagcc
61 gggcaggggg cgcccgccac ggcacccgcg cgctcctagc gccccagacc cgcctgcggg
121 cccggatcct ccttgccact gtcccacccg ccgtccctgc ccctccaccc tttgtgtcgc
181 cgcagcccgg tgcccccggc tctgcgggac cccggccggg ccggaccctg gcaaagcgcc
241 aggccccgcg tgggctcccg gcgagcggtt gatggcgagg gggcgcggcg cgggctctgt
301 agcccgagtt cccgacgctg gaggcccggc ccgcctcagc cgcattgtcc cgggccgcgc
361 gcaccggccc tgagctgcgc cgccgcagca cccgcccgcc gcccgcgggg ccatgcggag
421 agccgccggg atggaggact tctccgcgga ggaagaggag tcctggtacg accagcagga
481 cctggagcag gacttgcacc tagctgcgga gctggggaag actctgctgg agaggaacaa
541 ggagctggag gggtccctgc agcagatgta ctccaccaat gaggaacagg tgcaggagat
601 cgagtaccta accaagcagc tggacacgct gcggcacgtg aacgagcagc acgccaaagt
661 ctatgagcag ctggacctga cagcccggga cctggagctg accaaccaca ggctggtgct
721 ggagagtaag gctgcccagc agaagatcca tgggctgacg gagaccattg agcgcctcca
781 ggctcaggtg gaggagctgc aggcccaggt ggagcaactg agaggcctgg aacagctgcg
841 agtgctccgg gagaagcggg aacgcaggcg taccatccac accttcccct gcctcaagga
901 gctgtgcacc agcccccggt gcaaggatgc tttccgccta cacagttcct ccctggagct
961 gggcccgcgg cccctggagc aggagaacga gcggctgcag accctggtgg gggcgctgcg
1021 ctcccaggtg agccaggagc ggcagcgcaa ggagcgggcg gagcgcgagt acaccgcggt
1081 gctgcaggag tactcggagc tggagcgcca gctgtgcgag atggaggcct gtcgcctgcg
1141 tgtgcaggag ctggaggccg agctgctgga gctgcagcag atgaagcagg ccaagaccta
1201 cctactgggt ccggacgacc acctggccga ggccctgctc gcacccctca cgcaggcccc
1261 tgaggccgac gatccccagc ccggccgcgg ggacgacttg ggcgcccagg acggggtctc
1321 ctcaccggca gcctctccag gccacgtggt gcgcaagagc tgcagcgaca ctgcgctcaa
1381 cgccatcgtg gccaaagacc cagccagccg gcacgcgggc aacctcacac tgcacgccaa
1441 cagcgtgcgc aagcggggca tgtccatcct gcgggaggtg gacgagcagt accacgcgct
1501 gctggagaag tacgaggagc tgctgagcaa gtgccggcag cacggggccg gagtgcggca
1561 cgccggcgtg cagacctcgc gccccatctc ccgggacagc tcgtggaggg acctgcgcgg
1621 gggtgaggag ggccagggtg aggtcaaggc aggagagaag agcctgagcc agcacgtgga
1681 ggccgtggac aagcggctgg aacagagcca gcccgagtac aaggcgctct tcaaagagat
1741 cttctccagg atccagaaga ccaaggctga catcaacgcc accaaagtca agacgcacag
1801 cagcaagtga cccttctccg gcctgcagcc tcccccaggg tggaagccgt ggggtccctc
1861 aggcctgggc ggtgcagctt ccagagagcg agcgcccttt agcggcctgc caccacagca
1921 cgcggcctcc tgatccggaa gcacgcagca tgttccctgc tgagcggagg cagcccacct
1981 gtcctgcctc ccaggagccc ttggccacct cgcgccagcc caaaggcgca gctctgagtt
2041 caaagccaaa tgtccccact accccaggga tcccccagct cccccagccc ctggcttcct
2101 gaccctgcgc ctcaccctca gactggtgac caggcttctg aaagccattc tggatcagtt
2161 ggcttttttt tttttttggt taagtttgtt ttttctaaga gatttgcaat gcaaggtctc
2221 cttgacccct tgccacaact ggaaacactt gaaaggggac cccagggcca gctgtttcag
2281 gggtttcctg gaccacccac tgcttctccc caaccctgat gcgctgacat tcccttagca
2341 ccagctgtcc cacctccagg gtcctgacca ggtcagagat gtcccctgcc atgcagagca
2401 ggaagcctca gctgggcctg gagtgtccct gctccagccc tgccagggac aggtttctcc
2461 ctggatactc ttggcccacc gcagatctgt agccagtcag aggaggagga gaaggagccc
2521 ctcagcagag tggtgcagtt tcgctcagag cttgtctcct tggcttccaa ccccagaaat
2581 gcctgctggg ccttaagctt tccaggggcc ggggcagtgg ggagccccca tcccttcaca
2641 ccgccaccaa ctaaccaagc ttggcctctg actcccgtct ctgtgcttgc ccccatctca
2701 gggaccatga tgtctcagtc actccacgct ccccacaggc caaccctggc acaggtcatg
2761 tctgcagccc ccagaatgtt ctggacatgc accaccagcc ggtggtccca atgtccaccc
2821 ctgcctcccc ttcactgggg actggggttt tcgccccatg ctgcatcgtg ttgtattggg
2881 atggggctga ggaacatgct ccctccctcc ctcccataaa atgcctgctc ttcacctccc
2941 acctttgtgg ggggcttttg aggacccagc tgcgtcagga gttttgcttc aagatgtcag
3001 aaagtcaagt tcagctaaga gacacctagg tccccagctt gccctgagca gcccttcagg
3061 gcttctggtt ccttctgccg cccttcctga gaccttagaa accagaagag ccatacagtc
3121 agtggaaggc gggggggccc tggcctctgc accgggatcc cagtgggaac cttcatgcct
3181 tatttatttc taatgggtaa aggggttttc ttaccaagca tccctgacct cctggagaca
3241 ccacctgctt tccgggcggc actgtgatgg gagctggtgg cgactgagtc cttctgtacg
3301 tgcaactggg aaacttttgt cctttgaggc taggcagctc cctgccctcc gtgtgtgtct
3361 gttatctggg ggagaggagt gtggaagggt tgggggaaga gctccagcct gtctgctccc
3421 cagctctgta gtggcagacc agcgtcacct ttgaagtata cgtgagagaa atatatttac
3481 aaatgcttta ttctcttctt taataaaaaa tgcaccagta ttctaaaaaa aaaaaaaaaa
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