LOCUS BC047529 4069 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens aftiphilin, mRNA (cDNA clone MGC:33965 IMAGE:5311682),
complete cds.
ACCESSION BC047529
VERSION BC047529.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4069)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4069)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: p Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50409938.
FEATURES Location/Qualifiers
source 1..4069
/db_xref="H-InvDB:HIT000053161"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33965 IMAGE:5311682"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4069
/gene="AFTPH"
/gene_synonym="FLJ20080"
/gene_synonym="FLJ23793"
/gene_synonym="MGC33965"
/gene_synonym="Nbla10388"
/db_xref="GeneID:54812"
/db_xref="HGNC:HGNC:25951"
CDS 315..3044
/gene="AFTPH"
/gene_synonym="FLJ20080"
/gene_synonym="FLJ23793"
/gene_synonym="MGC33965"
/gene_synonym="Nbla10388"
/codon_start=1
/product="aftiphilin"
/protein_id="AAH47529.1"
/db_xref="GeneID:54812"
/db_xref="HGNC:HGNC:25951"
/translation="MEPDIIRMYSSSPPPLDNGAEDDDDDEFGEFGGFSEVSPSGVGF
VDFDTPDYTRPKEEFVPSNHFMPIHEFSENVDSLTSFKSIKNGNDKDITAELSAPVKG
QSDVLLSTTSKEIISSEMLATSIDGMERPGNLNKVVEQRQNVGTLESFSPGDFRTNMN
VVHQNKQLESCNGEKPPCLEILTNGFAVLETVNPQGTDDLDNVADSKGRKPLSTHSTE
YNLDSVPSPAEEFADFATFSKKERIQLEEIECAVLNDREALTIRENNKINRVNELNSV
KEVALGRSLDNKGDTDGEDQVCVSEISIVTNRGFSVEKQGLPTLQQDEFLQSGVQSKA
WSLVDSADNSEAIRREQCKTEEKLDLLTSKCAHLCMDSVKTSDDEVGSPKEESRKFTN
FQSPNIDPTEENDLDDSLSVKNGDSSNDFVTCNDINEDDFGDFGDFGSASGSTPPFVT
GTQDSMSDATFEESSEHFPHFSEPGDDFGEFGDINAVSCQEETILTKSDLKQTSDNLS
EECQLARKSSGTGTEPVAKLKNGQEGEIGHFDSVPNIQDDCNGFQDSDDFADFSSAGP
SQVVDWNAFEDEQKDSCSWAAFGDQQATESHHRKEAWQSHRTDENIDTPGTPKTHSVP
SATSKGAVASGHLQESATSVQTALLNRLERIFEACFPSILVPDAEEEVTSLKHLLETS
TLPIKTREALPESGELLDVWTELQDIHDAHGLRYQWGGSHSNKKLLSSLGIDTRNILF
TGNKKQPVIVPMYAAGLGMLEPTKEPLKPLSAAEKIASIGQTATMSPDMNTCTSDQFQ
ESLPPVQFDWSSSGLTNPLDGVDPELYELTTSKLEISTSSLKVTDAFARLMSTVEKTS
TSTSRKPKREEHLSEEAIKVVAGLPDLTFMHAKVLMFPATLTPSTSSQEKADG"
BASE COUNT 1277 a 736 c 902 g 1154 t
ORIGIN
1 gcatgatggg agagtgtgtg gagtgggcgg ggggtctccg cggaggaggt ggaggaggcg
61 gcggcggcgg cggaagaggg cggagggtag tgggatgggg gtcccgcggc agcggtgaaa
121 ctccgggtgg gcgtccatgg tgctgctgcg ctgacagggc tgtgagcagc cggccttccg
181 ctctcaccag ttccgcgtcg gaatagacgg tccttccccg gggagtcagt tcctccccgg
241 gcccctgagc catgcccatc gcagccgccc cgaaggagca aggtgtaaat taattatttg
301 aaagcaactg aacaatggag ccagacatca ttcgaatgta ctcttcatcc ccaccaccat
361 tagacaatgg agcagaggat gatgatgatg atgaatttgg ggaatttggt gggttttcag
421 aagttagccc ttctggtgta gggtttgttg atttcgatac accagattat actcgtccca
481 aggaagagtt tgtaccttca aaccatttta tgccaattca tgaattctca gaaaatgtag
541 atagccttac aagctttaag tccattaaaa atggtaatga taaggacatc actgctgaac
601 tttctgctcc tgtgaaagga cagtctgatg ttttactttc taccaccagc aaagaaataa
661 tttcatctga aatgttagct acttccattg atggcatgga aagaccagga aatttaaata
721 aagtagtgga gcagagacag aatgttggaa cacttgaaag tttctctcca ggagatttta
781 gaactaatat gaatgttgtt catcaaaaca agcagttaga gagctgcaat ggtgaaaagc
841 ctccttgtct ggagattcta acaaatgggt ttgcagtgtt ggaaactgta aatcctcagg
901 gaacagatga tctggacaat gtagctgatt caaagggacg gaagcctctt agcactcata
961 gcactgagta taatttagac tctgtaccta gtcctgctga ggaatttgca gattttgcca
1021 cattttccaa aaaggaaagg atacaattag aagaaataga atgtgcagtt ttaaatgata
1081 gagaagcact aaccattcgg gaaaacaata aaattaatag agtcaatgaa ctgaattctg
1141 taaaagaagt ggctttgggt agaagcttgg ataacaaagg agacactgat ggagaggatc
1201 aggtttgtgt ttcagaaata agcatagtga ctaacagagg tttcagtgtt gaaaaacaag
1261 gccttccaac actgcaacag gatgaatttt tacagtcagg tgttcagtca aaggcttgga
1321 gtttggtaga ctcagctgat aattcagaag ccattaggag agaacaatgt aaaactgaag
1381 aaaaacttga cttacttact tctaaatgtg ctcacctatg catggattct gttaaaactt
1441 ctgatgatga agttggttct cccaaagaag aaagtagaaa gtttactaat ttccaaagcc
1501 caaacattga ccccacagaa gaaaatgatt tggatgattc tttaagtgta aaaaatggtg
1561 atagtagtaa tgactttgtg acttgcaatg atatcaatga agatgatttt ggtgattttg
1621 gtgactttgg ctctgccagt ggctcaactc caccttttgt tactggtact caagattcaa
1681 tgagtgatgc cacttttgaa gagtcttcag agcactttcc acattttagt gaaccaggtg
1741 atgactttgg agaatttggg gatataaatg ctgtttcttg ccaagaggag acaatattaa
1801 caaagtcaga cctaaaacag acttctgata atttatcaga agaatgtcaa ttggcaagaa
1861 aatctagtgg aacaggcact gaacctgttg caaaacttaa aaatgggcaa gaaggtgaga
1921 ttggacattt tgattctgtg ccaaatattc aggatgactg caatggtttt caagactctg
1981 atgattttgc agacttcagt tcagctggtc ctagccaagt tgtagattgg aatgcttttg
2041 aggatgaaca aaaagatagt tgttcttggg ctgcttttgg agaccagcag gctactgaat
2101 ctcatcatcg aaaggaagcc tggcagtcac ataggacaga tgaaaatatt gatactccag
2161 gaacccccaa aacgcacagt gtaccttcag caacttccaa aggagcagtt gctagtggcc
2221 atttacagga atcagccact tcagttcaga cagctttatt aaaccgcctg gagcgaattt
2281 tcgaagcatg ttttccttcc atacttgtcc ctgatgctga agaggaagtt acttccctga
2341 agcacttgct ggaaacaagc actttgccaa taaaaacgag agaggcctta cctgaaagtg
2401 gggaattgct agatgtgtgg actgagctac aggatatcca tgatgcacat ggcttgagat
2461 accagtgggg cggctcccat agcaacaaga agcttttgtc ctccttggga atagacaccc
2521 gaaacattct cttcacgggc aataagaagc agcctgttat agtgcccatg tatgcagcag
2581 gattgggtat gttagagccc accaaggaac cactgaaacc actttctgct gcagaaaaaa
2641 tagcttccat cggtcagaca gccaccatgt caccagatat gaacacatgt acatctgatc
2701 agttccagga gtctctacca cccgtccagt ttgactggag tagcagtggc cttactaacc
2761 ctttagatgg tgtggatccg gagttgtatg agttaacaac ttctaagctg gaaatctcca
2821 cctcaagcct caaagtgact gatgcatttg caagactcat gtctacagta gagaagacaa
2881 gcacatctac cagtaggaaa ccgaaaagag aagagcacct aagtgaagaa gctatcaagg
2941 tggtcgctgg ccttcctgac ttaacattca tgcatgccaa ggtgttgatg ttcccagcca
3001 cgttaacacc ttccacaagc tctcaagaaa aagcagacgg ataactgatg tgaattggac
3061 agtttctatt gcttttcctt ttttccatcc cttccctacc atcaaaagca tacctgctct
3121 aattaaaaaa aaaaaaaaaa aaaattcaag ttcagctgat ttgttggtaa gccgcactag
3181 aaaggtatac atagtaatgt atatttattt acatactgaa gtcctaaatt tatattagaa
3241 aaatgtaaat aatcgggggt aaacattttt gaagatttat tctttttgtg ttgctggggt
3301 gtatacattt atgtctttgt gaaatacact ggtggtgtcc ttcttacaaa acttttgaaa
3361 taaaaaaaaa actcaaatct tcactgtctg tgaaatcccc ttcagtcttt tcagattgca
3421 ttgactgtcc tcttgatttt tcatattaca tgtcaaatta cttttgctat cataaataag
3481 ctccaaagtc ccccatttaa ttttttttta attttgtgta tgatgggttt cagatctggc
3541 ttttgttaac attttggggc ttttttaatc ttttcaatct ggcgtattgc tgtttgacct
3601 tttgcaaggt acttaattgc tcttttgtta tagggtatgg atcattgtca gaacttgatt
3661 ggaggggttt aaagagattg tgtctgttta aaatcagtat gattcagaga aggaccaaat
3721 tatatgaatg tcttacaatg gaatttactt gttactgatt tttttgttct attgtaccac
3781 tattttttga ggattttgca cagtgtaaaa tgacataatc atagattgct atggtttagg
3841 ctgtatatac agtgaaaact atgggtttta aatgtttggg gaaattccta tggaaaaaag
3901 agagacatgt agaagaacct ctaacaaggt taatgtgcat gcccaaggtc ttttgaaatt
3961 tcagtgtgta aatttccttt ttagcttata caaaaataaa ataatttaaa agaaaaaaaa
4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aagaaaaaaa aaaaaaaaa
//