LOCUS BC047223 3728 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens cytokine-like nuclear factor n-pac, mRNA (cDNA clone
MGC:57217 IMAGE:5263991), complete cds.
ACCESSION BC047223
VERSION BC047223.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3728)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3728)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40556375.
FEATURES Location/Qualifiers
source 1..3728
/db_xref="H-InvDB:HIT000334041"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57217 IMAGE:5263991"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3728
/gene="N-PAC"
/gene_synonym="BM045"
/gene_synonym="HIBDL"
/db_xref="GeneID:84656"
CDS 18..1679
/gene="N-PAC"
/gene_synonym="BM045"
/gene_synonym="HIBDL"
/codon_start=1
/product="cytokine-like nuclear factor n-pac"
/protein_id="AAH47223.1"
/db_xref="GeneID:84656"
/translation="MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFV
KFFGTEDHAWIKVEQLKPYHAHKEEMIKINKGKRFQQAVDAVEEFLRRAKGKDQTSSH
NSSDDKNRRNSSEERSRPNSGDEKRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPL
KRAQEQSPRKRGRPPKDEKDLTIPESSTVKGMMAGPMAAFKWQPTASEPVKDADPHFH
HFLLSQTEKPAVCYQAITKKLKICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLG
LMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDP
KAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQ
LSNDGMLVILAAGDRGLYEDCSSCFQTMGKTSFFLGEVGNAAKMMLIVNMVQGSFMAT
IAEGLTLAQVTGRSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR
LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH"
BASE COUNT 937 a 957 c 988 g 846 t
ORIGIN
1 cgtggttggg tggtaagatg gcggctgtga gtctgcggct cggcgacttg gtgtggggga
61 aactcggccg atatcctcct tggccaggaa agattgttaa tccaccaaag gacttgaaga
121 aacctcgcgg aaagaaatgc ttctttgtga aattttttgg aacagaagat catgcctgga
181 tcaaagtgga acagctgaag ccatatcatg ctcataaaga ggaaatgata aaaattaaca
241 agggtaaacg attccagcaa gcggtagatg ctgtcgaaga gttcctcagg agagccaaag
301 ggaaagacca gacgtcatcc cacaattctt ctgatgacaa gaatcgacgt aattccagtg
361 aggagagaag taggccaaac tcaggtgatg agaagcgcaa acttagcctg tctgaaggga
421 aggtgaagaa gaacatggga gaaggaaaga agagggtgtc ttcaggctct tcagagagag
481 gctccaaatc ccctctgaaa agagcccaag agcaaagtcc ccggaagcgg ggtcggcccc
541 caaaggatga gaaggatctc accatcccgg agtctagtac cgtgaagggg atgatggccg
601 gaccgatggc cgcgtttaaa tggcagccaa ccgcaagcga gcctgttaaa gatgcagatc
661 ctcatttcca tcatttcctg ctaagccaaa cagagaagcc agctgtctgt taccaggcaa
721 tcacgaagaa gttgaaaata tgtgaagagg aaactggctc cacctccatc caggcagctg
781 acagcacagc cgtgaatggc agcatcacac ccacagacaa aaagatagga tttttgggcc
841 ttggtctcat gggaagtgga atcgtctcca acttgctaaa aatgggtcac acagtgactg
901 tctggaaccg cactgcagag aaatgtgatt tgttcatcca ggagggggcc cgtctgggaa
961 gaacccccgc tgaagtcgtc tcaacctgcg acatcacttt cgcctgcgtg tcggatccca
1021 aggcggccaa ggacctggtg ctgggcccca gtggtgtgct gcaagggatc cgccctggga
1081 agtgctacgt ggacatgtca acagtggacg ctgacaccgt cactgagctg gcccaggtga
1141 ttgtgtccag gggggggcgc tttctggaag cccccgtctc agggaatcag cagctgtcta
1201 atgacgggat gttggtgatc ttagcggctg gagacagggg gttatatgag gactgcagca
1261 gctgcttcca gacgatgggg aagacctcct tcttcctagg tgaagtgggc aatgcagcca
1321 agatgatgct gatcgtgaac atggtccaag ggagcttcat ggccactatt gccgaggggc
1381 tgaccctggc ccaggtgaca ggccggtccc agcagacact cttggacatc ctcaatcagg
1441 gacagttggc cagcatcttc ctggaccaga agtgccaaaa tatcctgcaa ggaaacttta
1501 agcctgattt ctacctgaaa tacattcaga aggatctccg cttagccatt gcgctgggtg
1561 atgcggtcaa ccatccgact cccatggcag ctgcagcaaa tgaggtgtac aaaagagcca
1621 aggcgctgga ccagtctgac aacgatatgt ccgccgtgta ccgagcctac atacactaag
1681 ctgtcgacac cccgccctca cccctccaat cccccctctg accccctctt cctcacatgg
1741 ggtcgggggc ctgggagttc attctggacc agccgaccta tctccatttc ctttatacag
1801 actttgagac ttgccatcag cacagcacac agcagcaccc ttcccctgag gccggtgggg
1861 aggggacaag tgtcagcagg attggcgtgt gggaaagctc ttgagctggg cactggcccc
1921 ccggacgagg tggctgtgtg ttcacacaca cacacacaca cacacacaca cacacacaca
1981 caggctctcg ccccaggata gaagctgccc agaaactgct gcctggcttt ttttcttccg
2041 agcttgtctt atctcaaacc ccttccagtc aaggaactag aatcagcaac gagagttgga
2101 agccttccca cagcttcccc cagagcgaag aggctgtagt catgtcccca tcccccactg
2161 gattccctac aaggagaggc cttgggccca gatgagccag tacagactcc agacagaggg
2221 gcccttgggg ccctccaacc tcaggtgatg agctgagaaa gatgttcacg tctaagcgtc
2281 cagtgtgcac ccagcgctcc atagacgcct ttgtgaactg aaaagagact ggcagagtcc
2341 cgagaagatg gggccctggc tttccaggga gtgcagcaag cagccggcct gcaggtgagc
2401 atggaggccc ggccctcacc gcctcgaagc catgccccag atgccactgc cacagcgggc
2461 gctcgctcct cactaggctg ttttagtatt tggatttgca ttccatccct tgggagggag
2521 tcctcagggc cactagtgat gagccaagag gagtgggggt tgggggcgct cctttctgtt
2581 tccgttaggc cacaggctct tcacctggct ctgaagagcc actcttacct cggtcccctc
2641 ccagtggtcc caccttctcc accctgccct gccaagtccc ctgcatgccc accgctctcc
2701 atcctccctc ctctccctct tcctcccgtg gagacagtat ttctttctgt ctgtcccttt
2761 ggcccagacc cagcctgacc aacgatgagc atttcttagg ctcagctctt gatacggaaa
2821 cgagtgtctt cactccagcc agcatcatgg tcttcggtgc ttcccgggcc cggggtctgt
2881 cgggagggaa gagaactggg cctgacctac ctgaactgac tggccctccg aggtgggtct
2941 gggacatcct agaggcccta catttgtcct tggatagggg accggggggg gcttggaatg
3001 ttgcaaaaaa aaaagttacc caagggatgt cagtttttta tccctctgca tgggttggat
3061 tttccaaaat cataatttgc agaaggaagg ccagcattta cgatgcaata tgtaattata
3121 tatagggtgg ccacactagg gcggggtcct tcccccctca cagctttggc ccctttcaga
3181 gattagaaac tgggttagag gattgcagaa gacgagtggg gggagggcag ggaagatgcc
3241 tgtcgggttt ttagcacagt tcatttcact gggattttga agcatttctg tctgaacaca
3301 aagcctgttc tagtcctggc ggaacacact gggggtgggg gcgggggaag atgcggtaat
3361 gaaaccggtt agtcaatttt gtcttaatat tgttgacaat tctgtaaagt tcctttttat
3421 gaatatttct gtttaagcta tttcaccttt cttttgaaat ccttcccttt taaggagaaa
3481 atgtgacact tgtgaaaaag cttgtaagaa agcccctccc ttttttcttt aaacctttaa
3541 atgacaaatc taggtaatta aggttgtgaa tttttatttt tgctttgttt ttaatgaaca
3601 tttgtctttc agaataggat tgtgtgataa tgtttaaatg gcaaaaacaa aacatgattt
3661 tgtgcaatta acaaagctac tgcaagaaaa ataaaacact tcttggtaac acaaaaaaaa
3721 aaaaaaaa
//