LOCUS BC047181 2413 bp mRNA linear VRT 15-JUL-2006
DEFINITION Danio rerio ATP-binding cassette, sub-family F (GCN20), member 2,
mRNA (cDNA clone MGC:55716 IMAGE:3815998), complete cds.
ACCESSION BC047181
VERSION BC047181.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 2413)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2413)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 102 Row: d Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42542860.
FEATURES Location/Qualifiers
source 1..2413
/organism="Danio rerio"
/mol_type="mRNA"
/strain="AB"
/db_xref="taxon:7955"
/clone="MGC:55716 IMAGE:3815998"
/tissue_type="Whole body, adult, (one male and one female,
including unfertilized eggs)"
/clone_lib="Sugano Kawakami zebrafish DRA"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..2413
/gene="abcf2"
/gene_synonym="fb04f06"
/gene_synonym="fc74f03"
/gene_synonym="fd58d07"
/gene_synonym="wu:fb04f06"
/gene_synonym="wu:fc74f03"
/gene_synonym="wu:fd58d07"
/db_xref="GeneID:336770"
/db_xref="ZFIN:ZDB-GENE-030131-8714"
CDS 131..1972
/gene="abcf2"
/gene_synonym="fb04f06"
/gene_synonym="fc74f03"
/gene_synonym="fd58d07"
/gene_synonym="wu:fb04f06"
/gene_synonym="wu:fc74f03"
/gene_synonym="wu:fd58d07"
/codon_start=1
/product="ATP-binding cassette, sub-family F (GCN20),
member 2"
/protein_id="AAH47181.1"
/db_xref="GeneID:336770"
/db_xref="ZFIN:ZDB-GENE-030131-8714"
/translation="MPSDLAKKKAAKKKEAAKARGRTRKPEDGVNGDAEKPEIQENGA
AEVNGVDSLAKELDEFELKKTEARAVTGVLASHPNSTDVHISSLSLTFHGQELLSDTS
LELNSGRRYGLIGLNGTGKSMLLSAISHREVPIPEHIDIYHLTREMAPSEKTALQCVM
EVDEERIKLEKEAERLAHEDSECEKLMELYERLEELDADKASMRASRILHGLGFTTSM
QQKKLKDFSGGWRMRVALARALFLKPFMLLLDEPTNHLDLDACVWLEEELSQFKRILV
LISHSQDFLNGVCTNIIHLHQRKLKYYTGNYDQYVKTREELEENQMKRFNWEQDQIAH
MKNYIARFGHGSAKLARQAQSKEKTLQKMVASGLTERVVNDKTLSFYFPPCGKIPPPV
IMVQNVSFRYSENTPYIYKNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPSDGM
IRKHSHVKIGRYHQHLTEQLELDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQV
SPIRNLSDGQKCRVCFAWLARQNPHMLFLDEPTNHLDIETIDALAEAINDFEGGMMLV
SHDFRLTQQVAQEIWVCEKQTITKWSRDILAYKEHLKSKIDKQMHDL"
BASE COUNT 689 a 506 c 605 g 613 t
ORIGIN
1 gggccggtat tggtgacacg cgccttgtac cgcttgtagc gcgagccatg agaccgcttc
61 tctggtgcta gcgcttcatc aggaaaagag ctagattttt aggggtgtcc tgttgggatt
121 tgcagttaaa atgccatctg atttagcgaa aaagaaggcg gcgaagaaaa aggaagcagc
181 caaagctcgc gggcgtacaa gaaagccaga agatggagtg aatggtgatg cagagaaacc
241 cgagatccag gagaacggag ctgctgaggt caatggagtt gacagtttgg cgaaggagct
301 agatgagttt gagctgaaga aaactgaggc tcgtgcagtg actggtgtgc tggcatctca
361 tcccaacagt acagacgtcc acatcagcag tttgtctctc acctttcatg gacaggagct
421 gctcagcgac actagtttgg agctcaactc tggtcgtcgg tacggcctta ttggacttaa
481 cggaaccggc aaatccatgc tactgtcagc gatcagtcac cgagaggtgc caattccaga
541 gcatatcgac atctaccacc tgacccgtga gatggcacct agcgagaaga cagctctaca
601 gtgtgtgatg gaggtagatg aggagaggat aaagctggag aaggaggcag aacgattggc
661 tcatgaggac tctgaatgcg agaagcttat ggagctttat gagcgtttgg aggagctgga
721 tgctgataaa gcctccatga gggcctcacg gatcctccat ggtctgggct tcaccacctc
781 catgcagcag aagaaactca aagacttcag tggtggctgg agaatgcgtg ttgctcttgc
841 tcgggcactg ttcctcaaac ccttcatgtt gcttttggat gaaccaacaa accacctgga
901 cttggacgcc tgtgtgtggc tagaagaaga gctcagtcag ttcaaaagaa tactggtttt
961 aatatcgcat tctcaggact tcctcaatgg cgtttgcacc aacattattc acctgcacca
1021 acgaaagctg aaatactaca cgggtaatta tgatcagtat gtgaagacca gagaggaact
1081 ggaggaaaat cagatgaagc ggtttaactg ggagcaggac cagatagcac acatgaagaa
1141 ctacattgca cggtttggtc acggatccgc aaagctggcc agacaagccc agagcaaaga
1201 gaaaactctg cagaagatgg tcgcctcggg tcttactgag cgtgttgtga atgacaagac
1261 cttgtcattt tattttcctc cctgtgggaa gatccctcct cctgtgatta tggttcagaa
1321 tgtcagcttc aggtattcgg aaaatacgcc atatatttat aagaacctgg agtttggaat
1381 tgacttggac acacgagtgg cccttgtagg gcccaatgga gctggcaagt ctacgttgct
1441 gaagctcctt actggagagc tcctgccctc agatggtatg atcagaaagc actcccatgt
1501 gaagattgga cgatatcatc agcatctaac ggaacaatta gagctcgacc tttctcctct
1561 ggaatacatg atgaagtgtt accctgagat taaggagaag gaagagatga ggaaaatcat
1621 tggtcgctat ggacttactg gcaaacagca ggtgagccca attaggaatc tgtctgatgg
1681 gcagaagtgc cgtgtgtgct tcgcttggtt ggcacggcaa aacccccaca tgctctttct
1741 tgatgagcct accaatcacc tcgacattga aacgatcgat gctctggctg aggccatcaa
1801 tgattttgag ggtggaatga tgctggtcag ccacgacttt aggctaactc agcaggtggc
1861 tcaggagatt tgggtttgtg aaaagcaaac aatcacgaaa tggagtaggg acattctggc
1921 ctacaaggaa catctgaaat caaaaattga caagcagatg catgatttat aaccaacagg
1981 agctgctcat tgaccgcagt ttcaacatct ctgccagcca gaacattgct ctccaggaaa
2041 aatacaagca tgctgtttag actgcagttt cagtaccacc tttaacacgg gagtcattta
2101 ctgaggttgc cagtggaagt agctgtctct ttatttcttc tgtgttttat atgcatcagt
2161 atttggactt tccttatgac aaacctatta gaatcaaggt tacgcacttc tttttctttt
2221 tttttttttt cttttcttgt cttcaactag taccgggcag gtctatagga caaacgctat
2281 aagataaact aaacttcatg gacttttttt ttttttcttt gaaattgttt aaagctgtat
2341 ttgcaataac tatgtaatat taaagacgta caatttttgg aaaaaaaaaa aaaaaaaaaa
2401 aaaaaaaaaa aaa
//