LOCUS BC047093 2544 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens chromosome 18 open reading frame 1, mRNA (cDNA clone
IMAGE:5310617), with apparent retained intron.
ACCESSION BC047093
VERSION BC047093.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2544)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2544)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51093709
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2544
/db_xref="H-InvDB:HIT000098456"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5310617"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 674 a 553 c 633 g 684 t
ORIGIN
1 aacgtgagcg tcccgcctgt cgcgtgtcct gccttggtaa gcgccctctc cggtccttcc
61 acactgaaag cttccagcag agatcaaggg aaggagtatt gtgtgagact tgcagatttc
121 ctcctttctg tctggactgg tttgatattt gcctgttgaa aagattactg aacgcagtgt
181 gacaagatga gccgtctagc tgcgttctgc ttgcctgtgt gtgtgacacg tccaggtgtg
241 aggccaaacc tgagaagtgc agactgctca ctgatagacg ttgctgtaaa cagtagtgcc
301 ctgggtgtac agctggtctc aggatcggag accccggact tattctctgc tcggtgacac
361 ggccggcttc ctgccgcaga gctcctggtt tctgttgatg gcagttgata attggtagcc
421 acagtctgcg gtcggagcca cagcatttga gtctagcacc tggggtgggc cctgctgata
481 cagtagagag agagtgaacg aggcagacag aaacacaccc cccccccctc cacgctcaca
541 cactctccca caccccatgc cagctataac tgcagctctg agctgcctgg agaggagatt
601 gccggaagct gaagggatgc tttgaacgtg ggggggctgc gtcacagttg gactcccact
661 tgcagaggac ctgattatgt ccagtgacca cctgaacaac agcacactga aggaggctca
721 gttcaaagac ctgttcttaa aaaaaggtac atttcccaag aactgctatg gatgatgcat
781 gctctttcgg gtttgctgtg gttcttcttg gagtttggtc tgaggacaga gctgagaaga
841 ggagaagctc tttctcaaga agtttctttc tacctaagag gggtctgtca actcagaaca
901 tttccgggtg ggactccctt taggaagatg catgtcaggc tttttcatct tctttcaagc
961 ctggaattag tttgttcctg ttggaggtgt tatgcatgag tacacagttt gttgctttgg
1021 agttttgttt ttttcaaatg tctgtatata aggctgagac ctcccctgga aattctgcta
1081 cttgttaata attccttttt cttcaccctc atgagctgaa aactgcattt taaagaaaag
1141 gtatttctca ggatgtggct ggttcattga acactttctt aggtcatcca tgtagtgaca
1201 ggagctatta ggaaggagaa ctgtgactct gagagataga gagccaaaga aagtgagaga
1261 cagacagact ggctgttgga tgagagcctc agaagccacc actctcccct gtggaaatga
1321 aggttccatt ccatgtgcag ctgtgttttt tttctgatgc actttcctaa attaataatg
1381 tggaggtgga ggtgagggtg gattttaaat gaatcctata gggggaatta tggcttatgt
1441 atgtattttt ttccatttat agcatggcag agggatagac ttttaaaagg tttataattg
1501 ctcttactcc tctgctgatt ttttagaaaa tcctgtcagt catctttgat cagaacatat
1561 ttaggtaaat ttctttctga agagatcatg aaactctaga ttctaaaatg cgtggtgaga
1621 agtaattgta gtggatgaag gcttgggctt tcataaagtg aggagatgcc actccagctg
1681 gacgggctcg tggagtctgc attcgaggga ttccctagtc cgtccagtca tcacgggctg
1741 ctgcccgcct gcccgtgccg tccaaggcac ctggccttgg gccggtatca ggtagccgcg
1801 cctgggtcac acctgccctc cacgttcatc tctccaccta cagatcatag ggaccgtttc
1861 ctcattttat tgtcatgcaa atgttgtaca taaatacatg gctataaaca ggcagctcag
1921 agtaaccagg aggctctttt ctcagtgaca gatcacaccc tcttagagta gtaatttttg
1981 aataattgtt gcaaaatatg aaaaccttta gcaaaactcc agcaccactg aagtcatcag
2041 gaagtgtttg ggagaatacg tgtctgtgct ggatgctgtt gaagcaggtc aggccgttgg
2101 ggtcccttcg ttcttagggc ttctccacca gcttctaaat ggggaatgcc aactttgtgc
2161 caggcacaca ctacctgctg agacactgtg gatgaacaag gcgttgaccc agggctcact
2221 ctgtagagga agaagaccag agaatggata ccaccaagac agtgataagt gctgcaacag
2281 ggttcagagc tgcacaggaa gtccccaaag gtagtgaacc catcatcggg gcttaggaaa
2341 gagcttttaa aggaagataa agccagcagg tgacgccaaa aactgggtat ttctgtaggg
2401 tagctttttt ccctttcgtt ctacttgttg tactatacag tagagtagcc aacccacctc
2461 caaggaaaat aaaattcaaa atatataatg taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2521 aaaaaaagaa aaaaaaaaaa aaaa
//