LOCUS BC046246 4864 bp mRNA linear HUM 19-OCT-2006
DEFINITION Homo sapiens jumonji, AT rich interactive domain 2, mRNA (cDNA
clone MGC:47594 IMAGE:4520786), complete cds.
ACCESSION BC046246
VERSION BC046246.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4864)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4864)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: b Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11863151.
FEATURES Location/Qualifiers
source 1..4864
/db_xref="H-InvDB:HIT000098346"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47594 IMAGE:4520786"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4864
/gene="JARID2"
/db_xref="GeneID:3720"
/db_xref="HGNC:HGNC:6196"
/db_xref="MIM:601594"
CDS 283..4023
/gene="JARID2"
/codon_start=1
/product="jumonji, AT rich interactive domain 2"
/protein_id="AAH46246.1"
/db_xref="GeneID:3720"
/db_xref="HGNC:HGNC:6196"
/db_xref="MIM:601594"
/translation="MSKERPKRNIIQKKYDDSDGIPWSEERVVRKVLYLSLKEFKNSQ
KRQHAEGIAGSLKTVNGLLGNDQSKGLGPASEQSENEKDDASQVSSTSNDVSSSDFEE
GPSRKRPRLQAQRKFAQSQPNSPSTTPVKIVEPLLPPPATQISDLSKRKPKTEDFLTF
LCLRGSPALPNSMVYFGSSQDEEEVEEEDDETEDVKTATNNASSSCQSTPRKGKTHKH
VHNGHVFNGSSRSTREKEPVQKHKSKEATPAKEKHSDHRADSRREQASANHPAAAPST
GSSAKGLAATHHHPPLHRSAQDLRKQVSKVNGVTRMSSLGAGVTSAKKMREVRPSPSK
TVKYTATVTKGAVTYTKAKRELVKDTKPNHHKPSSAVNHTISGKTESSNAKTRKQVLS
LGGASKSTGPAVNGLKVSGRLNPKSCTKEVGGRQLREGLQLREGLRNSKRRLEEAHQA
EKPQSPPKKMKGAAGPAEGPGKKAPAERGLLNGHVKKEVPERSLERNRPKRATAGKST
PGRQAHGKADSASCENRSTSQPESVHKPQDSGKAEKGGGKAGWAAMDEIPVLRPSAKE
FHDPLIYIESVRAQVEKFGMCRVIPPPDWRPECKLNDEMRFVTQIQHIHKLGRRWGPN
VQRLACIKKHLKSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLAD
MLRIPRTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEKEVLMEKEILEKRKGPLEGH
TENDHHKFHPLPRFEPKNGLIHGVAPRNGFRSKLKEVGQAQLKTGRRRLFAQEKEVVK
EEEEDKGVLNDFHKCIYKGRSVSLTTFYRTARNIMSMCFSKEPAPAEIEQEYWRLVEE
KDCHVAVHCGKVDTNTHGSGFPVGKSEPFSRHGWNLTVLPNNTGSILRHLGAVPGVTI
PWLNIGMVFSTSCWSRDQNHLPYIDYLHTGADCIWYCIPAEEENKLEDVVHTLLQANG
TPGLQMLESNVMISPEVLCKEGIKVHRTVQQSGQFVVCFPGSFVSKVCCGYSVSETVH
FATTQWTSMGFETAKEMKRRHIAKPFSMEKLLYQIAQAEAKKENGPTLSTISALLDEL
RDTELRQRRQLFEAGLHSSARYGSHDGSSTVADGKKKPRKWLQLETSERRCQICQHLC
YLSMVVQENENVVFCLECALRHVEKQKSCRGLKLMYRYDEEQIISLVNQICGKVSGKN
GSIENCLSKPTPKRGPRKRATVDVPPSRLSASSSSKSASSSS"
BASE COUNT 1296 a 1221 c 1327 g 1020 t
ORIGIN
1 gtgtgtatgt gtttcggggg aaattttcca ttatgagtgt tttactaaag tgaatttttt
61 tttgtttgct tcgttcgtct ttggctcttt ttttttcctt cccaatttcg gatttatttc
121 aaggcgaatc tggctttggg ggaagaggaa gaaaagtcgg attacaagat caaccaccac
181 caacaacaat aaaaaccacc aggatatttt tttgcaaatt tctgacggct ttaaattcat
241 gaagcaattg tccccttttg caatcagcat ttggatctca gaatgagcaa ggaaagaccc
301 aagaggaata tcattcagaa gaaatacgat gacagtgatg ggattccgtg gtcagaagaa
361 cgggtggtac gtaaagtcct ttatttgtct ctgaaggagt tcaagaattc ccagaagagg
421 cagcatgcgg aaggcattgc tgggagcctg aaaactgtga atgggctcct tggtaatgac
481 cagtctaagg gattaggacc agcatcagaa cagtcagaga atgaaaagga cgatgcatcc
541 caagtgtcct ccactagcaa cgatgttagt tcttcagatt ttgaagaagg gccgtcgagg
601 aaaaggccca ggctgcaagc acaaaggaag tttgctcagt ctcagccgaa tagtcccagc
661 acaactccag taaagatagt ggagccattg ctaccccctc cagctactca gatatcagac
721 ctctctaaaa ggaagcctaa gacagaagat tttcttacct ttctctgcct tcgaggttct
781 cctgcgctgc ccaacagcat ggtgtatttt ggaagctctc aggatgagga ggaagtcgag
841 gaggaagatg atgagacaga agacgtcaaa acagccacca acaatgcttc atcttcatgc
901 cagtcgaccc ccaggaaagg aaaaacccac aaacatgttc acaacgggca tgttttcaat
961 ggttccagca ggtcaacacg ggagaaggaa cctgttcaaa aacacaaaag caaagaggcc
1021 actcccgcaa aggagaagca cagcgatcac cgggctgaca gccgccggga gcaggcttca
1081 gctaaccacc ccgcagcggc cccctccacg ggttcctcgg ccaaggggct tgctgccacc
1141 catcaccacc cccctctgca tcggtcggct caggacttac ggaaacaggt ttctaaggta
1201 aacggagtca ctcgaatgtc atctctgggt gcaggtgtaa ccagtgccaa aaagatgcgc
1261 gaggtcagac cttcaccatc caaaactgtg aagtacactg ccacggtgac gaagggggct
1321 gtcacataca ccaaagccaa gagagaactg gtcaaggaca ccaaacccaa tcaccacaag
1381 cccagttccg ctgtcaacca cacaatctca gggaaaactg aaagtagcaa tgcaaaaacc
1441 cgcaaacagg tgctatccct cgggggggcg tccaagtcca ctgggcccgc cgtcaatggc
1501 ctcaaggtca gtggcaggtt gaacccaaag tcatgcacta aggaggtggg ggggcggcag
1561 ctgcgggagg gcctgcagct gcgggagggg ctgcggaact ccaagaggag actggaagag
1621 gcacaccagg cggagaagcc gcagtcgccc cccaagaaga tgaaaggggc ggctggcccc
1681 gccgaaggcc ctggcaagaa ggccccggcc gagagaggtc tgctgaacgg acacgtgaag
1741 aaggaagtgc cggagcgcag tctggagagg aatcggccga agcgggccac ggccgggaag
1801 agcacgccag gcagacaagc acatggcaag gcggacagcg cctcctgtga aaatcgttct
1861 acctcgcaac cggagtccgt gcacaagccg caggactcgg gcaaggccga gaagggcggc
1921 ggcaaggccg ggtgggcggc catggacgag atccccgtcc tcaggccctc cgccaaggag
1981 ttccacgatc cgctcatcta catcgagtcg gtccgcgctc aggtggagaa gttcgggatg
2041 tgcagggtga tcccccctcc ggactggcgg cccgagtgca agctcaacga tgagatgcgg
2101 tttgtcacgc agattcagca catccacaag ctgggccggc gctggggccc caacgtgcag
2161 cggctggcct gcatcaagaa gcacctcaaa tctcagggca tcaccatgga cgagctcccg
2221 ctcatagggg gctgtgagct cgacctggcc tgctttttcc ggctgattaa tgagatgggc
2281 ggcatgcagc aagtgactga cctcaaaaaa tggaacaaac tagcagacat gctgcgcatc
2341 cccagaactg cccaggaccg gctggccaag ctgcaggagg cctactgcca gtacctactc
2401 tcctacgact ccctgtcccc agaggagcac cggcggctgg agaaggaggt gctgatggag
2461 aaggagatcc tggagaagcg caaggggccg ctggaaggcc acacagagaa cgaccaccac
2521 aagttccacc ctctgccccg cttcgagccc aagaatgggc tcatccacgg cgtggccccc
2581 aggaacggct tccgcagcaa gctcaaggag gtgggccagg cccagttgaa gactggccgg
2641 cggcgactct tcgctcagga aaaagaagtg gtcaaggaag aggaggagga caaaggcgtc
2701 ctcaatgact tccacaagtg catctataag ggaaggtctg tttctctaac aactttttat
2761 cgaacagcga ggaatatcat gagcatgtgt ttcagcaagg agcctgcccc agccgaaatc
2821 gagcaagagt actggaggct agtggaagag aaggactgcc acgtggcagt gcactgcggc
2881 aaggtggaca ccaacactca cggcagtgga ttcccagtag gaaaatcaga acccttttcg
2941 aggcatggat ggaacctcac cgtcctcccc aataacacag ggtccatcct gcgtcacctc
3001 ggtgctgtgc ctggagtgac tattccctgg ctaaatattg gcatggtctt ttctacctca
3061 tgctggtctc gagaccaaaa tcaccttcca tacattgact acttacacac tggtgctgac
3121 tgcatttggt attgcattcc tgctgaggag gagaacaagc tggaagatgt ggtccacacc
3181 ctgctgcaag ccaatggcac cccagggctg cagatgctgg aaagcaacgt catgatctcc
3241 ccggaggtgc tgtgcaaaga ggggatcaag gtgcacagga ccgtgcagca gagtggccag
3301 tttgtcgtct gcttcccggg atcctttgtg tccaaagtgt gctgtgggta cagcgtgtct
3361 gaaaccgtgc actttgctac cacccagtgg acaagtatgg gctttgagac cgccaaggaa
3421 atgaagcgtc gccatatagc taagccattc tccatggaga agttactcta ccagattgca
3481 caagcagaag caaaaaaaga aaacggtccc actctcagta ccatctcagc cctcctggat
3541 gagctcaggg atacagagct gcggcagcgc aggcagctgt tcgaggctgg cctccactcc
3601 tccgcacgct atggcagcca cgatggcagc agcacggtgg cggacgggaa gaaaaagcct
3661 cgaaagtggc tgcagttgga gacgtcagag aggaggtgtc agatctgcca gcacctgtgc
3721 tacctgtcca tggtggtaca agagaacgaa aacgtcgtgt tctgtctgga gtgtgctctg
3781 cgccacgtgg agaaacagaa gtcctgccga gggctgaagt tgatgtaccg ctacgatgag
3841 gaacagatta tcagtctggt caatcagatc tgcggcaaag tgtctggtaa aaacggcagc
3901 attgagaact gtctcagtaa acccacacca aaaagaggtc cccgcaagag agcgacagtg
3961 gacgtgcccc cctcccgtct gtcagcctcc agttcatcca aaagtgcttc gagctcatca
4021 tgaagatgcc aacgcccgtg gtcgatttat atatattttt ttgtaattat tatattctag
4081 tttggagtac ttgctgtagg attcaagctg tctttgcact agctctaaag aagattttct
4141 tctggtttta gagaactaat tttgttttag cattaaactg ttgaactttt ttttgtactt
4201 agaaaaccta gatactgcag tcagattttg gaaactgccg tatagtcact gttttaaaaa
4261 ccccggaggg gctgtattaa tttgtattgc cccatggctg acaaaagcct ttttttttgg
4321 ttttgatttt tttttttttg taactgttgg ggggaaaaag gctttttaac ccatttttga
4381 agagggtgaa gtttggagaa caaatttaaa aaccatcagt catgtgagca gattttttag
4441 aagggatagg agacacacgc gcacacacac acacacacga aacttgaaat ggctttgctt
4501 tggctgtcgt cttctgccgt gtgccagatg agcttgtgat ctgggaagcc ggggcacccc
4561 cgttttgttt ctctgggcgg ttgtggcagc tgaaggcgga cgttgtttcc taaccatagg
4621 tggaacgagg agacgggagc gagtgggctc tccaccagca catcactatg catctgttcc
4681 aggaaagaag aaaagcgagc gaggaagacg gaaaagactg cctgccttgg aggggtcaca
4741 tgagggagac ctgtgcctga tttcattagg aaatccattc tgttattttt tggtgctgtt
4801 ggctacttta tcaaaaaacc cttcaatagc atccttaaga tttaaaaaaa aaaaaaaaaa
4861 aaaa
//