LOCUS BC046241 1718 bp mRNA linear HUM 11-AUG-2008
DEFINITION Homo sapiens trafficking protein particle complex 10, mRNA (cDNA
clone IMAGE:5929666), complete cds.
ACCESSION BC046241
VERSION BC046241.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1718)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1718)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 44 Row: p Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48928028
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1718
/db_xref="H-InvDB:HIT000053022"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5929666"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..1718
/gene="TRAPPC10"
/gene_synonym="EHOC-1"
/gene_synonym="EHOC1"
/gene_synonym="GT334"
/gene_synonym="TRS130"
/gene_synonym="TRS30"
/db_xref="GeneID:7109"
/db_xref="HGNC:HGNC:11868"
/db_xref="MIM:602103"
CDS 148..978
/gene="TRAPPC10"
/gene_synonym="EHOC-1"
/gene_synonym="EHOC1"
/gene_synonym="GT334"
/gene_synonym="TRS130"
/gene_synonym="TRS30"
/codon_start=1
/product="trafficking protein particle complex 10"
/protein_id="AAH46241.1"
/db_xref="GeneID:7109"
/db_xref="HGNC:HGNC:11868"
/db_xref="MIM:602103"
/translation="MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPRE
PMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKA
TVKDDLTKWQNVLKAHSSVDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSD
RCVVLSDPLKDSSRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWS
FCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGGIKCPFHNSVACW
"
BASE COUNT 416 a 398 c 444 g 460 t
ORIGIN
1 ggcggcagct gcggcgcaac cggctccgga gctgcctggc gcggccgggc gggcggcgcc
61 gctcaggctc gggctccggc tgggcccggc gcggcctcgg ggctgcccat ggggcgcggg
121 gggccgggcc ggtgacgccg gacgcccatg gacgcctctg aggagccgct gccgccggtg
181 atctacacca tggagaacaa gcccatcgtc acctgtgctg gagatcagaa tttatttacc
241 tctgtttatc caacgctctc tcagcagctt ccaagagaac caatggaatg gagaaggtcc
301 tatggccggg ctccgaagat gattcaccta gagtctaact ttgttcaatt caaagaggag
361 ctgctgccca aagaaggaaa caaagctctg ctcacgtttc ccttcctcca tatttactgg
421 acagagtgct gtgataccga agtgtataaa gctacagtaa aagatgacct caccaagtgg
481 cagaatgttc tgaaggctca tagctctgtg gactggttaa tagtgatagt tgaaaatgat
541 gccaagaaaa aaaacaaaac caacatcctt ccccgaacct ctattgtgga caaaataaga
601 aatgattttt gtaataaaca gagtgacagg tgtgttgtgc tctccgaccc cttgaaggac
661 tcttctcgaa ctcaggaatc ctggaatgcc ttcctgacca aactcaggac attgcttctt
721 atgtctttta ccaaaaacct aggcaagttt gaggatgaca tgagaacctt gagggagaag
781 aggactgagc caggctggag cttttgtgaa tatttcatgg ttcaggagga gcttgccttt
841 gttttcgaga tgctgcagca gttcgaggac gccctggtgc agtacgacga actggacgcc
901 ctcttctctc agtatgtggt caacttcggg gccgggggta taaaatgtcc tttccacaac
961 tcagtggcct gctggtgatg cttcgattct gtccctcgtt agaatcagag tggacgtccc
1021 tttgccttcc atccaggggt tatctttgga atgctcgagt gctcattgct gtgaacttat
1081 aaaatgccct tgggtgttca tctttctttt gcacttttaa ataatatctt aagctccttt
1141 acaattaaag aattagcaca gtgaaaccat acacagagag aaacattggt tattgtcctc
1201 agtgtttttc gctgatactt attttgatga aagtgatacc acgttatata gctgtttctc
1261 tgtcgctcct ttttgttact cacagcccat cctgggcatc tcttcaggtt agcaggtggg
1321 gtttggagtt gtttttgtta caattggtat tcctggcttg attccattac ctggtgttgg
1381 acattgggtt cttttatgct tcttgccacc acaagcagtg ctgtagtggg catctctgcc
1441 aggtgttctt tttgagaacc cttgtcacca tgtgtgaagg aaggagtaat tttgaggagc
1501 cctggtgtca gcaggagaac ctggagggag atgaagtgtg gggacggtca gttctagctg
1561 tgagcactgt cctcactctg gaactcatca gtggcgccga tggatactgg ctcatagtgc
1621 ttctgaagat caggtctgga tatctcactc tcctgagatg ccagtataga cacagaacca
1681 aagcaaagtg tttactaagt aaaaaaaaaa aaaaaaaa
//