LOCUS BC046145 1557 bp mRNA linear HUM 13-APR-2006
DEFINITION Homo sapiens hypothetical protein LOC339047, mRNA (cDNA clone
IMAGE:4179257), complete cds.
ACCESSION BC046145
VERSION BC046145.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1557)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1557)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5902013
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1557
/db_xref="H-InvDB:HIT000053001_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4179257"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1557
/gene="LOC339047"
/db_xref="GeneID:339047"
CDS 412..1521
/gene="LOC339047"
/codon_start=1
/product="LOC339047 protein"
/protein_id="AAH46145.1"
/db_xref="GeneID:339047"
/translation="MFCCLGYEWLSGGCKTWHSAWVINTLADHRHRGTDFGGSPWLLI
ITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNCRRQEGIKIV
LEDIFTLWRQVETKVRAKIRKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEK
ERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMA
AVEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPSECVLYPLPP
SADDNLKTPPECLLTPLPPSALPSADDNLKTPAECLLYPLPPSADDNLKTPPECLLTP
LPPSAPPSADDNLKTPPECVCSLPFHPQRMIISRN"
BASE COUNT 406 a 418 c 371 g 362 t
ORIGIN
1 acccgctgag cgtcgacaca gtcgctgttg gcctggtgtc cagcgtggtt gtctatcccg
61 tctacctggc catcctcttt ctcttccgga tgtcccggag caaggtggct gggagcccga
121 gccccacacc tgccgggcag caggtgctgg acgtcgacag ctgcctggac tcatccgtgc
181 tggacagctc cttcctcacg ttctcaggcc tccacgctga ggtgagggct ctactggggg
241 tcctgccgcc ttggcgcagc ttggactcaa gaccctgtgc acctctcagc aggcctttgc
301 tggacagatg aagagtgact tgtttctgga tgattctaag aggttgatgg acggatggct
361 acatggatgt gatggagatg gtttactatc gggaccttcc gcatcctgct gatgttttgt
421 tgcttaggat atgaatggct gagcggaggc tgtaaaacct ggcactctgc ttgggttatc
481 aatactctgg ctgaccatcg tcatcgtggg actgactttg gtggaagtcc ttggttactt
541 atcattactg tgtttctgag aagttataaa tttgccatct ccctctgcac aagttacctt
601 tgtgtgtctt tcctgaagac tatcttcccg tctcaaaatg gacatgatgg atccacggat
661 gtacagcaga gagccaggag gtccaactgc cgtagacagg aaggaattaa aattgtcctg
721 gaagacatct ttactttatg gagacaggtg gaaaccaaag ttcgagctaa aatccgtaag
781 atgaaggtga caacaaaagt caaccgtcat gacaaaatca atggaaagag gaagaccgcc
841 aaagaacatc tgaggaaact aagcatgaaa gaacgtgagc acggagaaaa ggagaggcag
901 gtgtcagagg cagaggaaaa tgggaaattg gatatgaaag aaatacacac ctacatggaa
961 atgtttcaac gtgcgcaagc gttgcggcgg cgggcagagg actactacag atgcaaaatc
1021 accccttctg caagaaagcc tctttgcaac cgggtcagaa tggcggcagt ggagcatcgt
1081 cattcttcag gattgcccta ctggccctac ctcacagctg aaactttaaa aaacaggatg
1141 ggccaccagc cacctcctcc aactcaacaa cattctataa ttgataactc cctgagcctc
1201 aagacacctt ccgagtgtgt gctctatccc cttccaccct cagcggatga taatctcaag
1261 acacctcccg agtgtctgct cactcccctt ccaccctcag ctctaccctc agcggatgat
1321 aatctcaaga cacctgccga gtgcctgctc tatccccttc caccctcagc ggatgataat
1381 ctcaagacac ctcccgagtg tctgctcact ccccttccac cctcagctcc accctcagcg
1441 gatgataatc tcaagacacc tcctgagtgt gtctgctcac tccccttcca ccctcagcgg
1501 atgataatct caagaaacta aggaagaata aataaataat ataaaaaaaa aaaaaaa
//