LOCUS BC045930 2121 bp mRNA linear VRT 15-JUL-2006
DEFINITION Danio rerio zgc:56126, mRNA (cDNA clone MGC:56126 IMAGE:5411700),
complete cds.
ACCESSION BC045930
VERSION BC045930.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 2121)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2121)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano
cDNA Library Preparation: Dr. Sumio Sugano
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 103 Row: g Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28279686.
FEATURES Location/Qualifiers
source 1..2121
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:56126 IMAGE:5411700"
/tissue_type="Whole body, adult male"
/clone_lib="Sugano SJD adult male"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..2121
/gene="zgc:56126"
/gene_synonym="Ephx1"
/gene_synonym="MGC56126"
/db_xref="GeneID:394043"
/db_xref="ZFIN:ZDB-GENE-040426-913"
CDS 64..1434
/gene="zgc:56126"
/gene_synonym="Ephx1"
/gene_synonym="MGC56126"
/codon_start=1
/product="zgc:56126"
/protein_id="AAH45930.1"
/db_xref="GeneID:394043"
/db_xref="ZFIN:ZDB-GENE-040426-913"
/translation="MYLEVIVALGLGLVVALIFLKKRKTVLKVQDGWWGVGTCPQGPE
DDSIRPFKVETTPEEIEDLHRRLDQTRSFPSLEDSQFNYGFNSKYLEKVVSYWRKDFN
WGKQLDKLNKYPHFKTKIEGIDIHYVHVKPKNLPEGTRAVPLMMVHGWPGSFYEFYGI
ISLLTEPSNPDDITFEVICPSIPGYGFSEASHKKGFDTVCAAHIFNKLMKRLGFTQYY
VQGGDWGSMITTNMAQLEPNAVKGLHINFAPPAQGSVLMGLSLIFGRRFPKLFGFTEH
DVKRLFPCMDKLVVDALRETGYMHIQATKPDTAGRGLNDSPVGLAAYILEKFSTWTDP
EFRKLEDGGLERKYSIDDLLTNVMIYWTSGCIISSMRFYKENFGKGLNQPHAKLPVHV
PTGVASFPNELLHTPKLWVTDKYRNLKSYTPIARGGHFAAMEEPQLLAEDVQNFVKIV
ENRKRK"
BASE COUNT 638 a 445 c 448 g 590 t
ORIGIN
1 actgcatctt ggtgctaaat gaacgcagca ttttatcttg ctactttttg agatccataa
61 accatgtacc tagaggtgat agtggcattg gggctcggat tggtggtcgc tctgatattt
121 ctaaaaaaga gaaagactgt cctgaaagta caggatgggt ggtggggtgt gggaacttgt
181 ccccaaggac ctgaggatga cagtatccgg ccatttaaag ttgagacgac tcctgaagag
241 attgaggatc tacaccgtag gctagaccaa acccgctcct ttccttctct tgaagacagc
301 cagttcaact acggcttcaa ctccaaatac cttgagaagg ttgtgtctta ctggaggaag
361 gactttaatt ggggaaaaca actggataaa ctgaacaaat atcctcattt caaaaccaaa
421 attgaaggta ttgatattca ctatgttcac gtgaaaccga agaacctgcc agagggaacc
481 cgcgctgtac cactgatgat ggttcacgga tggcctggct ctttttatga gttttacggc
541 atcatctccc tgctcacaga gccatctaat ccagatgaca taacctttga agtcatttgc
601 ccctcgatac ctggttacgg cttttcagaa gcatcacaca agaaaggttt tgacacagtg
661 tgtgctgctc atatattcaa taaactgatg aagcgccttg gattcaccca gtactatgtt
721 cagggaggag attgggggtc catgattacc acgaatatgg ctcagttgga gcccaatgct
781 gtaaaaggtc tccacattaa cttcgctccc cctgcacaag gcagtgttct tatgggctta
841 tctttaattt tcggccgtcg attccccaaa ctctttggct tcaccgagca tgatgtgaaa
901 cgtctattcc cctgcatgga caagcttgta gtggatgctt tgagggagac tggatacatg
961 cacatacagg ccactaaacc tgacactgca ggccgtgggt tgaatgactc ccctgttggt
1021 ttggctgctt acattttgga gaaattctca acctggactg accctgaatt taggaagctt
1081 gaggacggtg gactggagag gaagtattct attgatgatc ttctgacgaa tgtgatgatc
1141 tactggactt ctggatgcat tatatcctcc atgcgtttct acaaggagaa ctttggcaaa
1201 ggcctgaacc agcctcatgc aaagcttccg gttcacgttc cgacaggtgt ggcttctttc
1261 cctaatgagc ttttgcacac cccgaaactg tgggtaacag acaaataccg taacctcaag
1321 tcttacacac ccattgctcg tggaggccat tttgcagcta tggaggaacc acagttactg
1381 gctgaagatg tgcagaactt tgtcaagatt gtagagaaca ggaagcggaa atgatccatt
1441 ctaattcaca ctcatgggac tctaataaac gcatttataa agtgattacc atgtaggaaa
1501 aacacaatcc tcactacaaa tacataatca gcattgtcaa agctcttata aagaaatgca
1561 tttgcactgc taggaatata ctaccaattg tgctttaaag ggatagttca cccttcaaaa
1621 atgtattaaa ctggtataat ttttccctct tcacatgttc caaacctcat acaggttctt
1681 tcatctgctg aaaacacgag acaagatatt ccaaagaaca aactaaacca aaatcattgc
1741 ttccatagta agccaactgg gaccaacaat gattttggtg aactctacaa tggtagtcaa
1801 tggggaccat caacttttgg tcaccaacat atcttttgat tctgctcaaa agaagatatt
1861 ttgaagaatg ttggtaaaca aaaattggac ttccatagta agccaatcgc aattctggaa
1921 aaacttgtgt aaataaataa taacagaaat gtcatttttg ggtgagctgt ccctttaaga
1981 ggaattgtgc ttcacatgat tataaattga cagacgcttg cttgtgaaat atttcagagt
2041 gatttgatgc tgatgtgttt aaacaggatc aatacagttc aagttattaa acaatacgaa
2101 atttaaaaaa aaaaaaaaaa a
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