LOCUS       BC045625                3340 bp    mRNA    linear   HUM 17-JUL-2006
DEFINITION  Homo sapiens lin-9 homolog (C. elegans), mRNA (cDNA clone MGC:39574
            IMAGE:4837217), complete cds.
ACCESSION   BC045625
VERSION     BC045625.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3340)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 63 Row: b Column: 11
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 32996736.
FEATURES             Location/Qualifiers
     source          1..3340
                     /db_xref="H-InvDB:HIT000098082"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:39574 IMAGE:4837217"
                     /tissue_type="Testis"
                     /clone_lib="NIH_MGC_97"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..3340
                     /gene="LIN9"
                     /gene_synonym="BARA"
                     /gene_synonym="BARPsv"
                     /gene_synonym="Lin-9"
                     /gene_synonym="TGS"
                     /gene_synonym="TGS1"
                     /db_xref="GeneID:286826"
                     /db_xref="HGNC:HGNC:30830"
                     /db_xref="MIM:609375"
     CDS             311..1987
                     /gene="LIN9"
                     /gene_synonym="BARA"
                     /gene_synonym="BARPsv"
                     /gene_synonym="Lin-9"
                     /gene_synonym="TGS"
                     /gene_synonym="TGS1"
                     /codon_start=1
                     /product="lin-9 homolog (C. elegans)"
                     /protein_id="AAH45625.1"
                     /db_xref="GeneID:286826"
                     /db_xref="HGNC:HGNC:30830"
                     /db_xref="MIM:609375"
                     /translation="MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNT
                     WNEKYSSLQKTPVWKGRNTSSAVEMPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMV
                     PQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCV
                     CLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK
                     VADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTG
                     LGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLL
                     GQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSY
                     SMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRR
                     CEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLT
                     DSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD"
BASE COUNT         1078 a          633 c          679 g          950 t
ORIGIN      
        1 agcgcgggcc gcggaacatg cgccgggagc ggggcccggg cgggactccg gagctggtac
       61 tgctcccccc gcgctccggc gccgggcctc gccgtgcggc ctccttcctc ccttcctccc
      121 gcccggctcg gccggaggcg gcggcggagg ggcgaggcgc ggcccccctt cggcggcacc
      181 tcctccccgg gcaggcgcgg gcggagccgg gcccgcctca gccagccgcg gcgggagcag
      241 cgcagcgcgg cgccgcgggc agcgagctcc gcattcgaac ctccctcgca aagacagtct
      301 ccgccccaca atgcaccgcg gcgggcagcc tttgaaaaag cggcgcggct cgttcaagat
      361 ggcggagctc gaccagttgc ctgacgagag ctcttcagca aaagcccttg tcagtttaaa
      421 agaaggaagc ttatctaaca cgtggaatga aaagtacagt tctttacaga aaacacctgt
      481 ttggaaaggc aggaatacaa gctctgctgt ggaaatgcct ttcagaaatt caaaacgaag
      541 tcgacttttt tctgatgaag atgataggca aataaataca aggtcaccta aaagaaacca
      601 gagggttgca atggttccac agaaatttac agcaacaatg tcaacaccag ataagaaagc
      661 ttcacagaag attggttttc gattacgtaa tctgctcaag cttcctaaag cacataaatg
      721 gtgtatatac gagtggttct attcaaatat agataaacca ctttttgaag gtgataatga
      781 cttctgtgta tgtctaaagg aatcttttcc taatttgaaa acaagaaagt taacaagagt
      841 agaatgggga aaaattcggc ggcttatggg aaaaccacgg agatgttctt ctgcattttt
      901 tgaggaagag agatcagcat taaaacagaa acggcagaaa ataaggctct tacaacaaag
      961 gaaagttgca gatgtttcac aattcaaaga tctcccagat gaaattcctt tgcctctggt
     1021 tattggaacg aaagttacag cacgattacg tggtgttcat gatggtttgt tcactggaca
     1081 aatagatgct gtggatactc ttaatgctac ttatagagta acttttgata ggacagggct
     1141 tggaacccat accatccctg actatgaagt tctcagtaat gaacctcatg agacaatgcc
     1201 aattgctgcc tttggacaaa aacagcggcc ttctcgattt tttatgaccc caccacggtt
     1261 acattatact cctcctctcc agtcaccaat tatagataat gatcctttat taggacagtc
     1321 gccgtggaga agtaaaattt ctggctctga cactgaaaca ttaggtggtt ttccagtaga
     1381 atttcttatc caagtgacca gattatcaaa aattctcatg attaaaaagg aacatatcaa
     1441 gaaattaagg gaaatgaaca cagaagcaga aaaattgaaa tcatattcca tgcccatcag
     1501 cattgaattt cagcggagat atgcaacaat tgttctggag cttgaacagc tgaacaagga
     1561 cctaaacaaa gttttgcata aagttcaaca gtattgctat gagcttgctc cagaccaggg
     1621 gctccagcct gcagatcagc caacagatat gagacgcagg tgtgaggaag aagcacagga
     1681 aattgttcgg catgcaaatt cctcaacagg acagccctgc gttgaaaatg aaaatctgac
     1741 agacttaatt tccaggctta cagctatttt gttacaaatt aagtgtctag cagaaggagg
     1801 agacctgaat tcctttgaat tcaaatcact tacagactca ttaaatgata tcaagagtac
     1861 aatagacgct tctaatatca gttgctttca gaataatgta gaaatccatg ttgcacatat
     1921 tcagagtggc ctgagccaga tgggaaactt acatgccttt gcagcaaata acaccaacag
     1981 agactgagta aagatttcat tattccaact gcacgggaca ttgtttttga gaagttcttt
     2041 tcctttatat aggcttccaa caccaaataa cctaactgct ggaaaacaag ggaaatttaa
     2101 atctccaaat aaggcatttt aatagactgt actgcttctt aaaccagcat tgctgaccag
     2161 cattatattt atttttcttt tattattcag atgcagtagc attgcttatg ttacatatgt
     2221 ttatattcac aaatattttt aaactgaaat atctgaacat aatataattt cgtggaagaa
     2281 tacattgacc atttttttta atgtgcatga attcaccgca acacatgcag acaactgctg
     2341 caatggagag tatgaagaaa cctggtcttt ttattcatgt cggtggcagt gtggaaattc
     2401 catccagaaa attacaactc cacttgattt agttgatcac catctcagtc ttcaaaagat
     2461 aacatcatga ggtgtgggaa gtcctagttt taaggaaacc actgaaatat agatgggaaa
     2521 tgtggacttt acaagtatat gttatatata cttgcaatgt gacatggttc tgtagatcat
     2581 tttataataa taaatatttt aatttatcat aacatataaa agaaaccttt gttgtttgtt
     2641 gaaagaaaat gaaggaacag ggggaaaaaa ggtgcaaaat gctaaatttc taaaaatgga
     2701 tttggcatgt cttcccatca gttcaggtca aaagtgcatt gttgtgagat ttattaaaaa
     2761 aaaaatgata acacactatt ttcatatttt tttgtttatt tgcacaactt ttaaaccaga
     2821 ttactggtta aaatccaaca gtacacaatt tataaagtaa aaagatttta taaggaaaac
     2881 aaatataata accagtgctg tgaaatgcag aagaaaggct tgttttggtt gtttttcttt
     2941 tttaggaaaa cgctgcctaa aatgttaatc ttgtaaaaag tatgtatttg gaattttctt
     3001 cgttttaata gaatattata aactcaaaat ataaattttt ttcaaatttg gagtttaaga
     3061 tatagctgta gaggtggttt taattccttt agatgtctca taaaatgaga ctttttatat
     3121 gttaatgtat aataaaactg aaacaagatt attttccatt tgaaattttt gtatagttta
     3181 aaaaggcttc cgtattcttt gttggtattg tgccactgca gaactttagt gcagagttta
     3241 tatttagcta aactgttatg ttaattaaga aatgcataaa tcttctattc ttaatatttg
     3301 taattctaaa taaattgatc tatgaaaaaa aaaaaaaaaa
//