LOCUS BC045625 3340 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens lin-9 homolog (C. elegans), mRNA (cDNA clone MGC:39574 IMAGE:4837217), complete cds. ACCESSION BC045625 VERSION BC045625.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3340) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3340) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 63 Row: b Column: 11 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 32996736. FEATURES Location/Qualifiers source 1..3340 /db_xref="H-InvDB:HIT000098082" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39574 IMAGE:4837217" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3340 /gene="LIN9" /gene_synonym="BARA" /gene_synonym="BARPsv" /gene_synonym="Lin-9" /gene_synonym="TGS" /gene_synonym="TGS1" /db_xref="GeneID:286826" /db_xref="HGNC:HGNC:30830" /db_xref="MIM:609375" CDS 311..1987 /gene="LIN9" /gene_synonym="BARA" /gene_synonym="BARPsv" /gene_synonym="Lin-9" /gene_synonym="TGS" /gene_synonym="TGS1" /codon_start=1 /product="lin-9 homolog (C. elegans)" /protein_id="AAH45625.1" /db_xref="GeneID:286826" /db_xref="HGNC:HGNC:30830" /db_xref="MIM:609375" /translation="MHRGGQPLKKRRGSFKMAELDQLPDESSSAKALVSLKEGSLSNT WNEKYSSLQKTPVWKGRNTSSAVEMPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMV PQKFTATMSTPDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCV CLKESFPNLKTRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRK VADVSQFKDLPDEIPLPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTG LGTHTIPDYEVLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLL GQSPWRSKISGSDTETLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSY SMPISIEFQRRYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRR CEEEAQEIVRHANSSTGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLT DSLNDIKSTIDASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD" BASE COUNT 1078 a 633 c 679 g 950 t ORIGIN 1 agcgcgggcc gcggaacatg cgccgggagc ggggcccggg cgggactccg gagctggtac 61 tgctcccccc gcgctccggc gccgggcctc gccgtgcggc ctccttcctc ccttcctccc 121 gcccggctcg gccggaggcg gcggcggagg ggcgaggcgc ggcccccctt cggcggcacc 181 tcctccccgg gcaggcgcgg gcggagccgg gcccgcctca gccagccgcg gcgggagcag 241 cgcagcgcgg cgccgcgggc agcgagctcc gcattcgaac ctccctcgca aagacagtct 301 ccgccccaca atgcaccgcg gcgggcagcc tttgaaaaag cggcgcggct cgttcaagat 361 ggcggagctc gaccagttgc ctgacgagag ctcttcagca aaagcccttg tcagtttaaa 421 agaaggaagc ttatctaaca cgtggaatga aaagtacagt tctttacaga aaacacctgt 481 ttggaaaggc aggaatacaa gctctgctgt ggaaatgcct ttcagaaatt caaaacgaag 541 tcgacttttt tctgatgaag atgataggca aataaataca aggtcaccta aaagaaacca 601 gagggttgca atggttccac agaaatttac agcaacaatg tcaacaccag ataagaaagc 661 ttcacagaag attggttttc gattacgtaa tctgctcaag cttcctaaag cacataaatg 721 gtgtatatac gagtggttct attcaaatat agataaacca ctttttgaag gtgataatga 781 cttctgtgta tgtctaaagg aatcttttcc taatttgaaa acaagaaagt taacaagagt 841 agaatgggga aaaattcggc ggcttatggg aaaaccacgg agatgttctt ctgcattttt 901 tgaggaagag agatcagcat taaaacagaa acggcagaaa ataaggctct tacaacaaag 961 gaaagttgca gatgtttcac aattcaaaga tctcccagat gaaattcctt tgcctctggt 1021 tattggaacg aaagttacag cacgattacg tggtgttcat gatggtttgt tcactggaca 1081 aatagatgct gtggatactc ttaatgctac ttatagagta acttttgata ggacagggct 1141 tggaacccat accatccctg actatgaagt tctcagtaat gaacctcatg agacaatgcc 1201 aattgctgcc tttggacaaa aacagcggcc ttctcgattt tttatgaccc caccacggtt 1261 acattatact cctcctctcc agtcaccaat tatagataat gatcctttat taggacagtc 1321 gccgtggaga agtaaaattt ctggctctga cactgaaaca ttaggtggtt ttccagtaga 1381 atttcttatc caagtgacca gattatcaaa aattctcatg attaaaaagg aacatatcaa 1441 gaaattaagg gaaatgaaca cagaagcaga aaaattgaaa tcatattcca tgcccatcag 1501 cattgaattt cagcggagat atgcaacaat tgttctggag cttgaacagc tgaacaagga 1561 cctaaacaaa gttttgcata aagttcaaca gtattgctat gagcttgctc cagaccaggg 1621 gctccagcct gcagatcagc caacagatat gagacgcagg tgtgaggaag aagcacagga 1681 aattgttcgg catgcaaatt cctcaacagg acagccctgc gttgaaaatg aaaatctgac 1741 agacttaatt tccaggctta cagctatttt gttacaaatt aagtgtctag cagaaggagg 1801 agacctgaat tcctttgaat tcaaatcact tacagactca ttaaatgata tcaagagtac 1861 aatagacgct tctaatatca gttgctttca gaataatgta gaaatccatg ttgcacatat 1921 tcagagtggc ctgagccaga tgggaaactt acatgccttt gcagcaaata acaccaacag 1981 agactgagta aagatttcat tattccaact gcacgggaca ttgtttttga gaagttcttt 2041 tcctttatat aggcttccaa caccaaataa cctaactgct ggaaaacaag ggaaatttaa 2101 atctccaaat aaggcatttt aatagactgt actgcttctt aaaccagcat tgctgaccag 2161 cattatattt atttttcttt tattattcag atgcagtagc attgcttatg ttacatatgt 2221 ttatattcac aaatattttt aaactgaaat atctgaacat aatataattt cgtggaagaa 2281 tacattgacc atttttttta atgtgcatga attcaccgca acacatgcag acaactgctg 2341 caatggagag tatgaagaaa cctggtcttt ttattcatgt cggtggcagt gtggaaattc 2401 catccagaaa attacaactc cacttgattt agttgatcac catctcagtc ttcaaaagat 2461 aacatcatga ggtgtgggaa gtcctagttt taaggaaacc actgaaatat agatgggaaa 2521 tgtggacttt acaagtatat gttatatata cttgcaatgt gacatggttc tgtagatcat 2581 tttataataa taaatatttt aatttatcat aacatataaa agaaaccttt gttgtttgtt 2641 gaaagaaaat gaaggaacag ggggaaaaaa ggtgcaaaat gctaaatttc taaaaatgga 2701 tttggcatgt cttcccatca gttcaggtca aaagtgcatt gttgtgagat ttattaaaaa 2761 aaaaatgata acacactatt ttcatatttt tttgtttatt tgcacaactt ttaaaccaga 2821 ttactggtta aaatccaaca gtacacaatt tataaagtaa aaagatttta taaggaaaac 2881 aaatataata accagtgctg tgaaatgcag aagaaaggct tgttttggtt gtttttcttt 2941 tttaggaaaa cgctgcctaa aatgttaatc ttgtaaaaag tatgtatttg gaattttctt 3001 cgttttaata gaatattata aactcaaaat ataaattttt ttcaaatttg gagtttaaga 3061 tatagctgta gaggtggttt taattccttt agatgtctca taaaatgaga ctttttatat 3121 gttaatgtat aataaaactg aaacaagatt attttccatt tgaaattttt gtatagttta 3181 aaaaggcttc cgtattcttt gttggtattg tgccactgca gaactttagt gcagagttta 3241 tatttagcta aactgttatg ttaattaaga aatgcataaa tcttctattc ttaatatttg 3301 taattctaaa taaattgatc tatgaaaaaa aaaaaaaaaa //