LOCUS BC045621 4112 bp mRNA linear HUM 12-OCT-2006
DEFINITION Homo sapiens ankyrin repeat domain 42, mRNA (cDNA clone MGC:39524
IMAGE:4813915), complete cds.
ACCESSION BC045621
VERSION BC045621.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4112)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4112)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene
prediction.
FEATURES Location/Qualifiers
source 1..4112
/db_xref="H-InvDB:HIT000334028"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39524 IMAGE:4813915"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4112
/gene="ANKRD42"
/gene_synonym="FLJ37874"
/db_xref="GeneID:338699"
/db_xref="HGNC:HGNC:26752"
CDS 933..1529
/gene="ANKRD42"
/gene_synonym="FLJ37874"
/codon_start=1
/product="ANKRD42 protein"
/protein_id="AAH45621.1"
/db_xref="GeneID:338699"
/db_xref="HGNC:HGNC:26752"
/translation="MPGVANSGPSTSSRETANPCSRKKVHFGSIHDAVRAGDVKQLSE
IVVRGASINELDVLHKFTPLHWAAHSGSLECLHWLLWHGADITHVTTRGWTASHIAAI
RGQDACVQALIMNGANLTAQDDRGCTPLHLAATHGHSFTLQIMLRSGVDPSVTDKREW
RPVHYAAFHGRLGCLQLLVKWGCSIEDVDYNGNLPEPP"
BASE COUNT 1076 a 855 c 922 g 1259 t
ORIGIN
1 gcctctccag ccaagtggct ggagtcggga ggctggaaag agactccgag aaagtaccag
61 cggaaggcgg ccgccgctac ggcgattcgc agggagtagc agacgaagac ggtggccgcc
121 gcactagcca ccacgtgtgg aggataaacg gtctacacgg ccattccggc gccgagtcta
181 gggaaagagt tagcgacgac ggggaaagaa aatgtgaaga gagcgaccgc cgctccaggg
241 tcgctgcagg aagcctaagt gcagacgccg gcttctcccg cagtgacttg agaagggtca
301 gtgaaaacct cggccactgc cgcagcgtct ctagggagag agttagggga gatagtggcc
361 acagtcacag ctgctcttgg gagagagtta ggggagacag caccttctgc agcagcgacg
421 tgaattttag tgaagttgga ggccaccaaa ctaccgactc caggggaaca gccagagaag
481 accgaggcct ccgcctcagt ggtccttggg agggagtcag tgacattcgg gacccgcgaa
541 ctagtgactt cggggataga gtcagtgacg atcgcagtcg ccgcttcagt ggctcctggg
601 agggagggag tgtcgaaggc ggccacagcg ttggtagttc ttgggaggaa gtaagtggag
661 accgcggcta cgcagccagc gactcctctg gtgtgagcgg cagtgaagac gccagctacc
721 gcttcagtgg cttttgggag agagaaagtg aagacgaagg tttccgctgc agcttctggg
781 agagagcaag agaggacctt gggccccgtc ctagtgacga cggagaagag ggccgctgcc
841 gctgcagtgg ctcgtgggtg agagcaagtg aagaccgccg cagcatcagg ggcctggact
901 caactcctcc ccagagtcgg aggtgttgcg ccatgcccgg ggtggccaat tcaggcccct
961 ccacttcctc tagggagact gcaaacccct gttccaggaa gaaggtgcat tttggcagca
1021 tacatgatgc agtacgagct ggagatgtaa agcagctttc agaaatagtg gtacgtggag
1081 ccagcattaa tgaacttgat gttctccata agtttacccc tttacattgg gcagcacatt
1141 ctggaagttt ggagtgtctt cattggctgc tctggcatgg agctgatatc acacacgtaa
1201 caacgagagg ttggacagca tctcacatag ctgcaatcag gggtcaggat gcttgtgtac
1261 aggctcttat aatgaatgga gcaaatctga cagcccagga tgaccgggga tgcactcctt
1321 tacatcttgc tgcaactcat ggacattctt tcactttaca aataatgctc cgaagtggag
1381 tggatcccag tgtgactgat aagagagaat ggagacctgt gcattatgca gcttttcatg
1441 ggcggcttgg ctgcttgcaa cttcttgtta aatggggttg tagcatagaa gatgtggact
1501 acaatggaaa ccttccagaa cctccttaga tccctgtgga gcctctgatt ccttggcttg
1561 gcatgctgga cttacataat ttggcaccta cctacctgca tggcctcatc tttctatatc
1621 tttacactac tgtccaggat cattttgttt ttttctgaag gtcgtctttc agtgttcatt
1681 tagtgaagtc ttttggtatg aactctttca atttttgtgt atctgaaaat ttattttgtt
1741 ctcattcttt ttactttgta ttttgtaagt tttttttttt aaagtaaaat ttaaattgaa
1801 gtctcaaaaa acaaaaagcc cctctctcgg cgctgcctac ggaggtggca gccatctcct
1861 cctcagcatc atggccaccc tcagacccct tgtgaagccc aggatcatca aaaagagaac
1921 taagaagttc ttccggcacc agactgactg atatgtcaaa attaagtgta actggcagaa
1981 acccagaggt attgacaaca gggttcgtag aaggttcaag gaccaatctt gatgcccaac
2041 attggttgtg ggagcgacaa aaaaaacaaa gcacatgctg cctactgact tctggaagtt
2101 cctggtccac aacatcaagg agctggaagt gctgctgatg tgcaacagat cttactgtgc
2161 tgagatgttt cctccaagaa ctgcaaagcc atcgtggaaa gagctgccca gctgtccatc
2221 ggagtcacac caaccccaac gccaggctgc gcagtgaaga aaatgaatag acagctcatg
2281 tgcatgtttt gtgtttaaat aaaactgtaa aaactgcaaa gaaaaaccaa aaaacaacaa
2341 caaaaaatta ttttgtgtta ggcttccttc gctttttcag actgctttca atttccattt
2401 tcacatatgg tattattagt tttttttttt tagttttagt ctttctgatg gatgtatctc
2461 attgcagttt caaatttaca tttttcctga tgactaaaga tgttgaacat catttcgtac
2521 gtttaaaggc tatttggttt ttttgtgtgt gtgatgtact agttcaaatc ttttgcctat
2581 tggctgttag agtgtgtctt tttcttattg aatcatagga gttctttata tattctagat
2641 acaagccctt tgtcagttac gtttattacc aatatctttt catgcaaata tctttctaat
2701 ctttctactt catggcttgc tctttcattc tttggtattt tttgataaat gaggttttaa
2761 ttattttttt ttttttgaaa tagagtcttg ctctgtcgca caggctggag tgcagtggtg
2821 cagtctcggc ttgctgcaac ctctgcctcc cggattcaag cgattcttct gcctcagcct
2881 cccgagtagc tgggattaca ggtgtgcacc accacgcttg gctaattttt gtatttttag
2941 tagaaacaga attttagcat gttggccacg ctggtcttga actcctgacc ttgtgatcca
3001 cccacctcgg cctcccaaag tgctgggatt acaggtgtga gccaccgcgc ttggccagag
3061 gttttaattt taacgtagtc cattttaata atctcttcct ttgtagttag tcctttctgt
3121 actttcccta ttttgtgatc atgaagacat tcctttatgt tatctgttag aaattttatt
3181 tatctttcat atttatattc ccaatcctcc tagaactgac ttttccgtgt gtaatacaag
3241 gtaggggtca gttttatttt tgtattgtcc tttatcaaat atacttgatc atttttgttg
3301 gtcttgtctg gtcattaaaa aatccaattg tttctttaaa catgtatgat tattttattt
3361 ataaccaggt agagtattta taataatata gatgttaaga aagaatgtgg ccttaggtct
3421 agactgcttg tgttcaaatc gctctcataa aattattttt tattgataaa tgtacatatt
3481 tttggtgtac atgtgataat ttgatacatt catttgtatc aaatttgata atgtataaag
3541 atcaaatcaa ggtaattggg gtagccatcc cttaaatatt tcttttatac taggaacatt
3601 tgaattattt ttttctagtt atttttaaat acacaataga ttatggttaa ctataatcac
3661 cctactgatc tgtcaaacac tagatcttat ttcttctact caattgtata tttataccca
3721 ttaatcaact tctgttcttg ctctctccgt gctacccttc tggcctttgg taatcgccaa
3781 tcaatctact ctctatcttc atgagaccag cgtattttag ctcccacata tgaatgaaaa
3841 catataatat ttgtctttct gtgcttgact tattttactt aacataatga cctccaattc
3901 catccatctt gtggcactga cagtatttca ttcatttttg tgtgaattat atttcgttgt
3961 gaatatacat tacattttct ttatccattc atcactgatg tgcacttagg ttgattccat
4021 attttggcta ttgtgaatag tgtgttaata aacatgagag tgcagttaaa aaaaaaaaaa
4081 aaagaaaaaa aaaaagaaaa aaaaaaaaaa aa
//