LOCUS BC045606 5406 bp mRNA linear HUM 30-JUL-2005
DEFINITION Homo sapiens nidogen 1, mRNA (cDNA clone MGC:33141 IMAGE:5271590),
complete cds.
ACCESSION BC045606
VERSION BC045606.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5406)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5406)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: c Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505394.
FEATURES Location/Qualifiers
source 1..5406
/db_xref="H-InvDB:HIT000052940"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33141 IMAGE:5271590"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5406
/gene="NID1"
/gene_synonym="enactin"
/gene_synonym="ENTACTIN"
/db_xref="GeneID:4811"
/db_xref="MIM:131390"
CDS 13..3357
/gene="NID1"
/gene_synonym="enactin"
/gene_synonym="ENTACTIN"
/codon_start=1
/product="NID1 protein"
/protein_id="AAH45606.1"
/db_xref="GeneID:4811"
/db_xref="MIM:131390"
/translation="MLASSSRIRAAWTRALLLPLLLAGPVGCLSRQELFPFGPGQGDL
ELEDGDDFVSPALELRGALRFYDRSDIDAVYVTTNGIIATSEPPAKESHPGLFPPTFG
AVAPFLADLDTTDGLGKVYYREDLSPSITQRAAECVHRGFPEISFQPSSAVVVTWESV
APYQGPSRDPDQKGKRNTFQAVLASSDSSSYAIFLYPEDGLQFHTTFSKKENNQVPAV
VAFSQGSVGFLWKSNGAYNIFANDRESIENLAKSSNSGQQGVWVFEIGSPATTNGVVP
ADVILGTEDGAEYDDEDEDYDLATTRLGLEDVGTTPFSYKALRRGGADTYSVPSVLSP
RRAATERPLGPPTERTRSFQLAVETFHQQHPQVIDVDEVEETGVVFSYNTDSRQTCAN
NRHQCSVHAECRDYATGFCCSCVAGYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVP
IVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPVGGIIGWMFAVEQDGFKNG
FSITGGEFTRQAEVTFVGHPGNLVIKQRFSGIDEHGHLTIDTELEGRVPQIPFGSSVH
IEPYTELYHYSTSVITSSSTREYTVTEPERDGASPSRIYTYQWRQTITFQECVHDDSR
PALPSTQQLSVDSVFVLYNQEEKILRYALSNSIGPVREGSPDALQNPCYIGTHGCDTN
AACRPGPRTQFTCECSIGFRGDGRTCYEVEKTRCQHEREHILGAAGATDPQRPIPPGL
FVPECDAHGHYAPTQCHGSTGYCWCVDRDGREVEGTRTRPGMTPPCLSTVAPPIHQGP
AVPTAVIPLPPGTHLLFAQTGKIERLPLEGNTMRKTEAKAFLHVPAKVIIGLAFDCVD
KMVYWTDITEPSIGRASLHGGEPTTIIRQDLGSPEGIAVDHLGRNIFWTDSNLDRIEV
AKLDGTQRRVLFETDLVNPRGIVTDSVRGNLYWTDWNRDNPKIETSYMDGTNRRILVQ
DDLGLPNGLTFDAFSSQLCWVDAGTNRAECLNPSQPSRRKALEGLQYPFAVTSYGKNL
YFTDWKMNSVVALDLAISKETDAFQPHKQTRLYGITTALSQCPQGHNYCSVNNGGCTH
LCLATPGSRTCRCPDNTLGVDCIEQK"
BASE COUNT 1335 a 1440 c 1323 g 1308 t
ORIGIN
1 cagttcggga acatgttggc ctcgagcagc cggatccggg ctgcgtggac gcgggcgctg
61 ctgctgccgc tgctgctggc ggggcctgtg ggctgcctga gccgccagga gctctttccc
121 ttcggccccg gacaggggga cctggagctg gaggacgggg atgacttcgt ctctcctgcc
181 ctggagctgc gtggggcgct ccgcttctac gacagatccg acatcgacgc agtctacgtc
241 accacaaatg gcatcattgc tacgagtgaa cccccggcca aagaatccca tcccgggctc
301 ttcccaccaa cattcggtgc agtcgcccct ttcctggcgg acttggacac gaccgatggc
361 ctggggaagg tttattatcg agaagactta tccccctcca tcactcagcg agcagcagag
421 tgtgtccaca gagggttccc ggagatctct ttccagccta gtagcgcggt ggttgtcact
481 tgggaatccg tggcccccta ccaagggccc agcagggacc cagaccagaa aggcaagaga
541 aacacgttcc aggctgttct agcctcctct gattccagct cctatgccat tttcctttat
601 cctgaggatg gtctgcagtt ccatacgaca ttctcaaaga aggaaaacaa ccaagttcct
661 gccgtggttg cattcagtca aggttcagtg ggattcttat ggaagagcaa cggagcttat
721 aacatatttg ctaatgacag ggaatcaatt gaaaatttgg ccaagagtag taactctggg
781 cagcagggtg tctgggtgtt tgagattggg agtccagcca ccaccaatgg cgtggtgcct
841 gcagacgtga tcctcggaac tgaagatggg gcagagtatg atgatgagga tgaagattat
901 gacctggcga ccactcgtct gggcctggag gatgtgggca ccacgccctt ctcctacaag
961 gctctgagaa ggggaggtgc tgacacatac agtgtgccca gcgtcctctc cccgcgccgg
1021 gcagctaccg aaaggcccct tggacctccc acagagagaa ccaggtcttt ccagttggca
1081 gtggagactt ttcaccagca gcaccctcag gtcatagatg tggatgaagt tgaggaaaca
1141 ggagttgttt tcagctataa cacggattcc cgccagacgt gtgctaacaa cagacaccag
1201 tgctcggtgc acgcagagtg cagggactac gccacgggct tctgctgcag ctgtgtcgct
1261 ggctatacgg gcaatggcag gcaatgtgtt gcagaaggtt ccccccagcg agtcaatggc
1321 aaggtgaaag gaaggatctt tgtggggagc agccaggtcc ccattgtctt tgagaacact
1381 gacctccact cttacgtagt aatgaaccac gggcgctcct acacagccat cagcaccatt
1441 cccgagaccg ttggatattc tctgcttcca ctggccccag ttggaggcat cattggatgg
1501 atgtttgcag tggagcagga cggattcaag aatgggttca gcatcaccgg gggtgagttc
1561 actcgccagg ctgaggtgac cttcgtgggg cacccgggca atctggtcat taagcagcgg
1621 ttcagcggca tcgatgagca tgggcacctg accatcgaca cggagctgga gggccgcgtg
1681 ccgcagattc cgttcggctc ctccgtgcac attgagccct acacggagct gtaccactac
1741 tccacctcag tgatcacttc ctcctccacc cgggagtaca cggtgactga gcccgagcga
1801 gatggggcat ctccttcacg catctacact taccagtggc gccagaccat caccttccag
1861 gaatgcgtcc acgatgactc ccggccagcc ctgcccagca cccagcagct ctcggtggac
1921 agcgtgttcg tcctgtacaa ccaggaggag aagatcttgc gctatgctct cagcaactcc
1981 attgggcctg tgagggaagg ctcccctgat gctcttcaga atccctgcta catcggcact
2041 catgggtgtg acaccaacgc ggcctgtcgc cctggtccca ggacacagtt cacctgcgag
2101 tgctccatcg gcttccgagg agacgggcga acctgctatg aggtggagaa aacccggtgc
2161 cagcacgagc gagaacacat tctcggggcg gcgggggcga cagacccaca gcgacccatt
2221 cctccggggc tgttcgttcc tgagtgcgat gcgcacgggc actacgcgcc cacccagtgc
2281 cacggcagca ccggctactg ctggtgcgtg gatcgcgacg gccgcgaggt ggagggcacc
2341 aggaccaggc ccgggatgac gcccccgtgt ctgagtacag tggctccccc gattcaccaa
2401 ggacctgcgg tgcctaccgc cgtgatcccc ttgcctcctg ggacccattt actctttgcc
2461 cagactggga agattgagcg cctgcccctg gagggaaata ccatgaggaa gacagaagca
2521 aaggcgttcc ttcatgtccc ggctaaagtc atcattggac tggcctttga ctgcgtggac
2581 aagatggttt actggacgga catcactgag ccttccattg ggagagctag tctacatggt
2641 ggagagccaa ccaccatcat tagacaagat cttggaagtc cagaaggtat cgctgttgat
2701 caccttggcc gcaacatctt ctggacagac tctaacctgg atcgaataga agtggcgaag
2761 ctggacggca cgcagcgccg ggtgctcttt gagactgact tggtgaatcc cagaggcatt
2821 gtaacggatt ccgtgagagg gaacctttac tggacagact ggaacagaga taaccccaag
2881 attgaaactt cctacatgga cggcacgaac cggaggatcc ttgtgcagga tgacctgggc
2941 ttgcccaatg gactgacctt cgatgcgttc tcatctcagc tctgctgggt ggatgcaggc
3001 accaatcggg cggaatgcct gaaccccagt cagcccagca gacgcaaggc tctcgaaggg
3061 ctccagtatc cttttgctgt gacgagctac gggaagaatc tgtatttcac agactggaag
3121 atgaattccg tggttgctct cgatcttgca atttccaagg agacggatgc tttccaaccc
3181 cacaagcaga cccggctgta tggcatcacc acggccctgt ctcagtgtcc gcaaggccat
3241 aactactgct cagtgaacaa tggcggctgc acccacctat gcttggccac cccagggagc
3301 aggacctgcc gttgccctga caacaccttg ggagttgact gtatcgaaca gaaatgaaga
3361 caagagtgcc ttatttcctt tccaagtatt tcacagcaac actctacttg aagcaacttg
3421 gtccagattg aaaagtgtcc tctggctgag tggccactag gcccagaccc agcccagcct
3481 gagccccaac aacttttccc tcactgttcc ccaaaacatg caccctggac ttctctaata
3541 gaaaagtctc cacccctaca caaggacaga accctccacc cctaccccca accctcagac
3601 agacttatac acccctgagt gaggattaca tgcccatccc agtgtcctag gaccttttcc
3661 caatactagc cccccagtgg tgaacagaac ctcccaaatt tgagttgcac ccttccctgt
3721 ggccttatga gctcagcctc gctttgaggt acccaccgtc ctgtcagctc cttgacctat
3781 gagccggggc ctgactagga aaagttggga gttaaggagg aaattagcat tccttaatgt
3841 tttgttttgg tgctctgaat ttcttcttta ttatagtcct atagttttac tcctcagttc
3901 ctcaccatca tcatcttgtc taagaccccc attataatat tcatgcgctg ctttttcatc
3961 aaaacctacc ctgtcctaga gatctatggg catttggtgg atgataatga gcagcccctc
4021 ccagatagaa tgtcaatatt tgagcagtag gatattggca tttgttagtt aaaggcttaa
4081 atcaaaagaa tgtccaatgg taggaatttc aaggtgtagg tcagatattt gagaataggg
4141 gatttttttg atgtgcctta aattatacca aagattacta attattcctc tttgcccaaa
4201 atacttgcat ccaaggttct agtctctgtt gctgtgctgg tctttagccc cactgcttgc
4261 actgatgtcc ctccttttca cggagaccta tctgaggtac aggatggggc tggcaccaga
4321 tgatgtccca ccacagtccc tcacctccgg cctccacatg acagaaccaa tttacactca
4381 accatgacct cacccctcct tggtttctcc ctcgatctgt ggcccttttt ggatgtattc
4441 ttatctaaca acacaatccg gaaagactga attgaatatt tatactaatg gttcatatcc
4501 tttattgctc aatgatctaa ttaaagggat cattgccaca tttcatgttt atatttctac
4561 aatttgttta gaaaacatct cctgaccata tcagtagctc gtgttatctt tttatcaact
4621 gcttcccaga gtcctaaaac aatagaaatt ttggattgaa aagttcagca taaggagttt
4681 gagtcagtaa aggatgggat aaaggagtcg agatgattca atgaaaagta tcacaaaaaa
4741 gagattgatc aacaagagaa ataaaaaagc ccaagaggaa gtggtagggg aaggaattta
4801 agaacagcaa taagtaaaac tcttaagtaa ctccaaaaag aaaatggtac attttgccaa
4861 agaccactta tacttgagaa catggaagaa tttgcctgat actctctttg gggaaaagag
4921 tctctcctct tttcctcaaa ccccagtaca ctcagcctct ctgccccacc ttctcctgac
4981 tttgtcctca cttgcttctg cagtacattg gaacctgaat tgaaagaaag tcttccttga
5041 ataattggag tttgtcttga gaggcaaata tagccccaag aatcacaaga ttcgaggacc
5101 atgtaggtct tttacgtagc ccaaatccat aaattagtct cactttttgt atttatcgtt
5161 tcatattaaa ccctctatat caaatgttca tcatgatttt gtatgatttt tataactatt
5221 ttattcattt tattagattt attctaaaat tttttaatgg taaattctta aactgtggaa
5281 accactgaag gtgcttatta actgttctcc cagatttgta caagtattgg atgattcctt
5341 gagtttacag ctgtacaaat agtgtggaaa ataaactttt tttaaaaaag aaaaaaaaaa
5401 aaaaaa
//