LOCUS BC045571 1709 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protein tyrosine phosphatase type IVA, member 1, mRNA
(cDNA clone MGC:57320 IMAGE:4826233), complete cds.
ACCESSION BC045571
VERSION BC045571.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: e Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62865860.
FEATURES Location/Qualifiers
source 1..1709
/db_xref="H-InvDB:HIT000334025"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57320 IMAGE:4826233"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1709
/gene="PTP4A1"
/gene_synonym="HH72"
/gene_synonym="PRL-1"
/gene_synonym="PRL1"
/gene_synonym="PTP(CAAX1)"
/gene_synonym="PTPCAAX1"
/db_xref="GeneID:7803"
/db_xref="HGNC:HGNC:9634"
/db_xref="MIM:601585"
CDS 1154..1675
/gene="PTP4A1"
/gene_synonym="HH72"
/gene_synonym="PRL-1"
/gene_synonym="PRL1"
/gene_synonym="PTP(CAAX1)"
/gene_synonym="PTPCAAX1"
/codon_start=1
/product="protein tyrosine phosphatase type IVA, member 1"
/protein_id="AAH45571.1"
/db_xref="GeneID:7803"
/db_xref="HGNC:HGNC:9634"
/db_xref="MIM:601585"
/translation="MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTT
IVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAV
HCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF
KDSNGHRNNCCIQ"
BASE COUNT 419 a 434 c 411 g 445 t
ORIGIN
1 aatgatgacc gtggttaagg cagtagaaag caggctcgac actgagacgc ggttccagcc
61 ctagaaggat tgcattttac gattcaggca aacttcgagt ctcctcatgt gacatgtgtg
121 cactcctgga ccgttttaat tatgagaaac gtggtttgca gcatgattcc ttccagtcga
181 taaatcggaa tctctctcgc tcccacccct tcttaacttc aggcttcctg catcccggag
241 cactcccggc agccccttcc ctcccccgcc ccggggatgc tccgactcgg cgcttagcca
301 ttcatcaacc ggttcacacc ggcggcggcc gccgcggagt gacgtccgga gggggcgggc
361 ctccgccccc gcctgtcggc tcctggcccg cggttccagg ccgcgattgg tggctggagg
421 gttgcacgtc gcgccggcta taaaggggag ggcttgtgac gcaagggcgc ctcggcgcgt
481 gtattggctc cttcggctgc gggccggctc ggctacgcgc tctgctccga gccgctcact
541 gcatggtaga gtctggtgcc cccgccgccg cctgcatcgc cgccaccgcc gctccgccac
601 gaccaccgcc gcctcctgcc ctgcagccac cgccaccgcc tgtgtcgccg ccgcctcggg
661 accggctgta tgattaggcc acaatcttca atgagtaaac atattcctca attctgtggt
721 gttcttggtc acacatttat ggagtttctg aagggcagtg gagattactg ccaggcacag
781 cacgacctct atgcagacaa gtgaactgta gaaactgatt actgctccac caagaagccc
841 ccataagagt ggttatcctg gacacagaag tgttgaattg aaatccacag agcattttac
901 aagagttctg acctggatgg ggtaaacctc agtgcacttc ttttctgttg gcctcagtat
961 tactggattg aagaattgct gcttcttgtt aggaggttca tttcacttat cattacttac
1021 aacttcatac tcaaagcact gagaatttca agtggagtat attgaagtag acttcagttt
1081 ctttgcatca tttctgtatt caattttttt aattatttca taaccctatt gagtgttttt
1141 taactaaatt aacatggctc gaatgaaccg cccagctcct gtggaagtca catacaagaa
1201 catgagattt cttattacac acaatccaac caatgcgacc ttaaacaaat ttatagagga
1261 acttaagaag tatggagtta ccacaatagt aagagtatgt gaagcaactt atgacactac
1321 tcttgtggag aaagaaggta tccatgttct tgattggcct tttgatgatg gtgcaccacc
1381 atccaaccag attgttgatg actggttaag tcttgtgaaa attaagtttc gtgaagaacc
1441 tggttgttgt attgctgttc attgcgttgc aggccttggg agagctccag tacttgttgc
1501 cctagcatta attgaaggtg gaatgaaata cgaagatgca gtacaattca taagacaaaa
1561 gcggcgtgga gcttttaaca gcaagcaact tctgtatttg gagaagtatc gtcctaaaat
1621 gcggctgcgt ttcaaagatt ccaacggtca tagaaacaac tgttgcattc aataaaattg
1681 gggtgcctaa tgcgaaaaaa aaaaaaaaa
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