LOCUS BC045552 2707 bp mRNA linear HUM 11-AUG-2005
DEFINITION Homo sapiens FYVE, RhoGEF and PH domain containing 4, mRNA (cDNA
clone MGC:57222 IMAGE:4831180), complete cds.
ACCESSION BC045552
VERSION BC045552.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2707)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2707)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: f Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21245127.
FEATURES Location/Qualifiers
source 1..2707
/db_xref="H-InvDB:HIT000098035"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57222 IMAGE:4831180"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2707
/gene="FGD4"
/gene_synonym="FRABIN"
/gene_synonym="FRABP"
/gene_synonym="ZFYVE6"
/db_xref="GeneID:121512"
CDS 1259..2674
/gene="FGD4"
/gene_synonym="FRABIN"
/gene_synonym="FRABP"
/gene_synonym="ZFYVE6"
/codon_start=1
/product="FGD4 protein"
/protein_id="AAH45552.1"
/db_xref="GeneID:121512"
/translation="MVNKIFSNISSINAFHSKFLLPELEKRMQEWETTPRIGDILQKL
APFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGSLTLQHHMLEPVQ
RIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYE
MLGEEEDIVNPSNELIKEGQILKLAARNTSARERYLFLFNNMLLYCVPKFSLVGSKFT
VRTRVGIDGMKIVETQNEEYPHTFQVSGKERTLELQASSAQDKEEWIKALQETIDAFH
QRHETFRNAIAKDNDIHSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHC
RACGYVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRKGILEIESAEV
SGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQVSKPHLSEGTDALGGKG
KRVDSGLKICRTRVQAVSLFH"
BASE COUNT 927 a 535 c 621 g 624 t
ORIGIN
1 ctggtctggg aagtggggaa agcaggggag cctgtgctgg gtgagattat ctgcaatgga
61 ccgggttaat gggaggcttg ctttggctcg ctggaagaac aaatgaaggg agttttactt
121 caaccatttg tgacttctgg ccaagaggaa taaattcagc ttttataagg cagcagtacc
181 tgtccaaaga tcgctttagt tccaccttgc tccacaagca gcacaaccac actggttggt
241 gagaatgtat ctgaagaaga ggctcaggga ataaatggga acaggccagc aaaacactca
301 gctgcaagtc caaagccaca agtgcctcca aagccattac acctgcagaa ttcaccttcg
361 tccaatatac accaaacccc caggcataaa gctttaccta gtgcaaaacc aaggatggag
421 gaaattaaac ctgcctctgc ttcttgtgtc tcaaaagaaa aacccagtaa ggtatcagat
481 ctcatcagtc gctttgaagg aggcagctca ttatcaaatt atagtgattt gaagaaagag
541 tctactgtga acctaaatgc tcctagaacc ccaggaaggc atggattgac aaccacacct
601 caacaaaaac tcctctccca gcacttgcca cagaggcagg gaaatgatac agataagact
661 cagggtgcac agacttgtgt ggccaacggt gtaatggcag cacaaaacca gatggaatgt
721 gaggaggaga aagctgccac tcttagctca gatacttcta ttcaagcttc tgaacccttg
781 cttgatacgc acatagtgaa tggagaaaga gatgaaactg ccacagctcc tgcatcaccc
841 acaacagata gctgtgatgg aaatgcttct gacagtagct acaggactcc aggcataggc
901 ccagtgctcc ccctagaaga aagaggggca gaaacagaaa ccaaggtaca agagagggaa
961 aatggggaaa gccctctgga actggagcag ctggaccagc accatgagat gaaggagact
1021 aatgagcaaa aacttcacaa aatagccaat gaacttttgc ttactgaaag agcttatgtc
1081 aaccgaattg acctcttaga tcagaaaata gagtggaggt gaatttagaa aattaacaac
1141 catctggaca ttatgaagga atagacctcc ttctgcctac atgtaacaga atggcaatta
1201 agaggtattt tattgcaaac tgttggaaga agcaaaccga ggctcgtttc cagcagagat
1261 ggtgaataaa atcttttcta atatttcatc aataaatgcc ttccatagta aattcctctt
1321 gccagagctg gagaaacgaa tgcaagaatg ggaaactact cctagaattg gagacatcct
1381 tcagaaattg gcaccattcc ttaagatgta tggagaatat gtgaaaggat ttgataatgc
1441 aatggaattg gttaaaaaca tgacagaacg tattccccag ttcaaatcag tggttgaaga
1501 aattcagaaa cagaaaatct gtgggagctt aactttgcag catcacatgc tagaacctgt
1561 tcagcggatt ccccggtatg agatgctcct taaggactat ctaaggaaat tgcctcctga
1621 ttccctggac tggaatgatg ctaaaaaatc acttgaaatt atatctacag ctgcaagcca
1681 ttctaatagt gcaataagga aaatggagaa cctaaagaaa ctcttagaga tttatgaaat
1741 gttgggagaa gaagaagaca ttgtaaaccc ttcaaatgaa ctaataaaag aaggacagat
1801 cctcaaacta gctgctcgaa acacttcagc acgagaacgc taccttttct tattcaacaa
1861 catgttgctg tactgtgtgc ccaaattcag cttggtaggc tctaaattca cagttcgaac
1921 cagggttggc attgatggaa tgaaaattgt agagactcaa aatgaagaat atccacatac
1981 tttccaggtg tctgggaaag agagaacact ggaactgcag gccagttctg cacaagacaa
2041 agaagaatgg atcaaggccc ttcaagaaac catcgatgct tttcatcaaa ggcatgaaac
2101 cttcagaaat gcaattgcaa aggataatga cattcactca gaggtttcta ctgctgagct
2161 agggaaaaga gccccaagat ggatccgaga taatgaagtg acaatgtgta tgaaatgtaa
2221 agaacctttc aatgcactga cacgaaggag gcatcattgt cgagcatgtg gatatgtggt
2281 ttgttggaaa tgctccgact acaaagctca acttgaatat gatggtggta aattgagcaa
2341 agtttgtaaa gactgttatc aaatcataag tggattcaca gacagtgaag aaaagaaaag
2401 aaaaggaatt ttagagattg aatcagcaga agtatctgga aacagtgtgg tgtgcagctt
2461 tcttcagtat atggagaagt caaaaccttg gcagaaagct tggtgtgtga tccccaagca
2521 agaccctctt gtgctgtaca tgtatggtgc cccccaggta tctaaaccac atctgtctga
2581 agggacagat gcccttgggg gcaaggggaa gcgagtggac agcggactca aaatctgtag
2641 aacaagagtt caggcagttt cactgtttca ttaaaattga aaaataatga gaaaaaaaaa
2701 aaaaaaa
//