LOCUS BC045286 1932 bp mRNA linear VRT 09-JUN-2008
DEFINITION Danio rerio coxsackie virus and adenovirus receptor, mRNA (cDNA
clone MGC:55255 IMAGE:3815585), complete cds.
ACCESSION BC045286
VERSION BC045286.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1932)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1932)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 102 Row: b Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28279495.
FEATURES Location/Qualifiers
source 1..1932
/organism="Danio rerio"
/mol_type="mRNA"
/strain="AB"
/db_xref="taxon:7955"
/clone="MGC:55255 IMAGE:3815585"
/tissue_type="Whole body, adult, (one male and one female,
including unfertilized eggs)"
/clone_lib="Sugano Kawakami zebrafish DRA"
/lab_host="DH10B"
/note="Vector: pME18S-FL3"
gene 1..1932
/gene="cxadr"
/gene_synonym="car"
/gene_synonym="cb331"
/gene_synonym="fb76g12"
/gene_synonym="wu:fb76g12"
/db_xref="GeneID:791793"
/db_xref="ZFIN:ZDB-GENE-020814-2"
CDS 169..1287
/gene="cxadr"
/gene_synonym="car"
/gene_synonym="cb331"
/gene_synonym="fb76g12"
/gene_synonym="wu:fb76g12"
/codon_start=1
/product="coxsackie virus and adenovirus receptor"
/protein_id="AAH45286.1"
/db_xref="GeneID:791793"
/db_xref="ZFIN:ZDB-GENE-020814-2"
/translation="MDMRTSFLCVTYVILLTGSACGLQITSTGQTSIEKASGESVKLD
CQFTLASDDSGPLDIEWSLQPSDNQKEEKVVIVYSGDRAFEHYYDPLKGRVHFNSPDP
KNGDASMNIMGLKATDTGTYQCKIKKVPGIASRKYLLTVMVRPSKPKCSAEGQTYVGK
NMVLKCSSVEGTQPMEYIWERTSGNKLLPPLAILDKVTGTMTLKNATGDASGTYRCQA
KNRVGTEECVVEVTITQPPNTAGIIAGVIICILLLLILLALILFCCCRARHKKKYEKE
IAYEIREDVPPPKSRVSTARSFTSVGSQRSSLGSMSPSNLHEYSKPQYDKIPSEEYDR
PPSHAPIPPPSRMAGPNLSRMGAIPVMIPAQNKDGSIV"
BASE COUNT 544 a 429 c 431 g 528 t
ORIGIN
1 atcacgtgtg cagattccaa ccagccacac aatccacctg cgcgagctgc ggctggactt
61 tctgatgctg cgcgagaaag aagagtgaac gcgaaacagc acaagtctcg aggaaaagtt
121 gttttttcac tcgcaccggg tagcaaattg ttgctttaaa gcagaggaat ggatatgagg
181 acgtcttttc tctgcgtaac ctatgttatt cttctcacag gctcagcctg tggactacag
241 atcacctcta ctggtcagac atccattgag aaagccagcg gagagagtgt gaagctggac
301 tgtcaattta ctcttgcttc tgatgattct gggcctttgg acattgagtg gagcttgcag
361 ccctccgaca accagaaaga agagaaagtg gtgatcgtgt attctggtga ccgggccttt
421 gaacactact atgatcctct taaagggaga gttcacttca actcgcctga tcctaaaaat
481 ggtgatgcct ccatgaacat catgggcctg aaagccacag acactgggac ttatcagtgc
541 aagatcaaga aagttcctgg tattgctagc aggaagtacc tgctaaccgt tatggtacgt
601 ccttctaaac ccaaatgtag tgcagagggt caaacttacg tgggtaagaa tatggtgttg
661 aagtgtagct ctgtggaagg cacacaacct atggagtaca tctgggagag aacctctggc
721 aataagctat tgcctccatt ggcaatcctg gataaagtca cgggcaccat gactctgaag
781 aatgccaccg gggatgcttc agggacatat cgatgccagg cgaaaaaccg cgttggaaca
841 gaagagtgtg tggtagaggt cactataacg caaccaccta atacagctgg gatcattgca
901 ggagtaataa tctgcattct gctgcttctc attctcctcg ccctcatcct cttctgctgc
961 tgccgtgctc gccacaagaa gaagtacgag aaggaaatcg cctatgagat cagagaggat
1021 gtgcctcctc caaagagccg tgtttccacc gcccgcagtt tcaccagtgt gggcagccaa
1081 cgctcttctc ttggctccat gtctccttcc aacctgcacg agtacagcaa gccccagtat
1141 gacaagattc cctctgaaga gtacgacagg ccccctagcc acgctcccat tcccccgccc
1201 agcagaatgg ccggccccaa cctcagccga atgggggcca tcccagtcat gatccctgcc
1261 caaaacaagg atgggtctat tgtgtaaaac tgaactggga tctttctctg cacattttga
1321 cggtctctgt tcttattcat cattttagcg gattttgtga aggagcaaat aggaggaact
1381 cagctgtacg gataatgcaa ttcggctggc agaacttcaa caaacatcaa cacaaacttt
1441 attcaacaag atgcagaaag tgatttgtct gctcgttttg taaataatgc aacgcatgat
1501 gatttttccc cattttgttt tctttaaaga tagaaggccc ttttttaatg taaggcactt
1561 ggattggttg cctattaagt gttctccaga gatgaattca aatcattcaa atgaaatgta
1621 tatgtaatac aaccccattt tagataaaaa ctctcaagct atttgttaat gtttttttaa
1681 accagtttga aatattttct ggcaacttga accattaatc tatgaacatt gttttctttt
1741 taattacttt tttgctggca aagatttact caaagggtct gtggaaaata tgacgaatag
1801 ctttggtttc tggatgtttc tcaaaaagat aacattagcg tttgcttgga ttgaagatta
1861 tttacctgtg atgtgtgtgt gtatatacat gaatatgaaa ttgatttgtt tgaaaaaaaa
1921 aaaaaaaaaa aa
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