LOCUS BC045113 3015 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens leucine rich repeat transmembrane neuronal 1, mRNA
(cDNA clone MGC:47886 IMAGE:5200499), complete cds.
ACCESSION BC045113
VERSION BC045113.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3015)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: e Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40255221
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3015
/db_xref="H-InvDB:HIT000052920"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47886 IMAGE:5200499"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3015
/gene="LRRTM1"
/db_xref="GeneID:347730"
/db_xref="HGNC:HGNC:19408"
/db_xref="MIM:610867"
CDS 271..1839
/gene="LRRTM1"
/codon_start=1
/product="LRRTM1 protein"
/protein_id="AAH45113.1"
/db_xref="GeneID:347730"
/db_xref="HGNC:HGNC:19408"
/db_xref="MIM:610867"
/translation="MDFLLLGLCLYWLLRRPSGVVLCLLGACFQMLPAAPSGCPQLCR
CEGRLLYCEALNLTEAPHNLSGLLGLSLRYNSLSELRAGQFTGLMQLTWLYLDHNHIC
SVQGDAFQKLRRVKELTLSSNQITQLPNTTFRPMPNLRSVDLSYNKLQALAPDLFHGL
RKLTTLHMRANAIQFVPVRIFQDCRSLKFLDIGYNQLKSLARNSFAGLFKLTELHLEH
NDLVKVNFAHFPRLISLHSLCLRRNKVAIVVSSLDWVWNLEKMDLSGNEIEYMEPHVF
ETVPHLQSLQLDSNRLTYIEPRILNSWKSLTSITLAGNLWDCGRNVCALASWLSNFQG
RYDGNLQCASPEYAQGEDVLDAVYAFHLCEDGAEPTSGHLLSAVTNRSDLGPPASSAT
TLADGGEGQHDGTFEPATVALPGGEHAENAVQIHKVVTGTMALIFSFLIVVLVLYVSW
KCFPASLRQLRQCFVTQRRKQKQKQTMHQMAAMSAQEYYVDYKPNHIEGALVIINEYG
SCTCHQQPARECEV"
BASE COUNT 696 a 894 c 765 g 660 t
ORIGIN
1 ttgcgggtcc tagaagtcgc ctccccgcct tgccggccgc ccttgcagcc ccgagccgag
61 cagcaaagtg agacattgtg cgcctgccag atccgccggc cgcggaccgg ggctgcctcg
121 gaaacacaga ggggtcttct ctcgccctgc atataattag cctgcacaca aagggagcag
181 ctgaatggag gttgtcactc tctggaaaag gatttctgac cgagcgcttc caatggacat
241 tctccagtct ctctggaaag attctcgcta atggatttcc tgctgctcgg tctctgtcta
301 tactggctgc tgaggaggcc ctcgggggtg gtcttgtgtc tgctgggggc ctgctttcag
361 atgctgcccg ccgcccccag cgggtgcccg cagctgtgcc ggtgcgaggg gcggctgctg
421 tactgcgagg cgctcaacct caccgaggcg ccccacaacc tgtccggcct gctgggcttg
481 tccctgcgct acaacagcct ctcggagctg cgcgccggcc agttcacggg gttaatgcag
541 ctcacgtggc tctatctgga tcacaatcac atctgctccg tgcaggggga cgcctttcag
601 aaactgcgcc gagttaagga actcacgctg agttccaacc agatcaccca actgcccaac
661 accaccttcc ggcccatgcc caacctgcgc agcgtggacc tctcgtacaa caagctgcag
721 gcgctcgcgc ccgacctctt ccacgggctg cggaagctca ccacgctgca tatgcgggcc
781 aacgccatcc agtttgtgcc cgtgcgcatc ttccaggact gccgcagcct caagtttctc
841 gacatcggat acaatcagct caagagtctg gcgcgcaact ctttcgccgg cttgtttaag
901 ctcaccgagc tgcacctcga gcacaacgac ttggtcaagg tgaacttcgc ccacttcccg
961 cgcctcatct ccctgcactc gctctgcctg cggaggaaca aggtggccat tgtggtcagc
1021 tcgctggact gggtttggaa cctggagaaa atggacttgt cgggcaacga gatcgagtac
1081 atggagcccc atgtgttcga gaccgtgccg cacctgcagt ccctgcagct ggactccaac
1141 cgcctcacct acatcgagcc ccggatcctc aactcttgga agtccctgac aagcatcacc
1201 ctggccggga acctgtggga ttgcgggcgc aacgtgtgtg ccctagcctc gtggctcagc
1261 aacttccagg ggcgctacga tggcaacttg cagtgcgcca gcccggagta cgcacagggc
1321 gaggacgtcc tggacgccgt gtacgccttc cacctgtgcg aggatggggc cgagcccacc
1381 agcggccacc tgctctcggc cgtcaccaac cgcagtgatc tggggccccc tgccagctcg
1441 gccaccacgc tcgcggacgg cggggagggg cagcacgacg gcacattcga gcctgccacc
1501 gtggctcttc caggcggcga gcacgccgag aacgccgtgc agatccacaa ggtggtcacg
1561 ggcaccatgg ccctcatctt ctccttcctc atcgtggtcc tggtgctcta cgtgtcctgg
1621 aagtgtttcc cagccagcct caggcagctc agacagtgct ttgtcacgca gcgcaggaag
1681 caaaagcaga aacagaccat gcatcagatg gctgccatgt ctgcccagga atactacgtt
1741 gattacaaac cgaaccacat tgagggagcc ctggtgatca tcaacgagta tggctcgtgt
1801 acctgccacc agcagcccgc gagggaatgc gaggtgtgat tgtcccagtg gctctcaacc
1861 catgcgctac caaatacgcc tgggcagccg ggacgggccg gcgggcacca ggctggggtc
1921 tccttgtctg tgctctgata tgctccttga ctgaaacttt aaggggatct ctcccagaga
1981 cttgacattt tagctttatt gtgtcttaaa aacaaaagcg aattaaaaca caacaaaaaa
2041 ccccacccca caaccttcag gacagtctat cttaaatttc atatgagaac tccttcctcc
2101 ctttgaagat ctgtccatat tcaggaatct gagagtgtaa aaaagttctg tcaacagatt
2161 cagtccccag tcctccttct ctgagcagac ctctcatccg cagcatatat ctgctagatc
2221 ttctaagagc tgaaatggag acttctggaa gaaggtggga aagaaatcca tctcggctta
2281 attaaccatt tatcgcatca tattactccc atcttaaaag tgcacgcgtt gtttttctga
2341 accctcacac aaaggctact actgtggtcc catatctgtc ggcccatgag aaacagtgtt
2401 cttggacctc acagccaagc agcactgaac tgcagcaaaa tccagcaaca cattcagcag
2461 cgagcagcct gctgagctcc actggtttat ccggggccac caaccccaaa gaactgggat
2521 gaaagcagat gtgagagagg aaaaggatct gtttttgttt tattttctac caggcccagc
2581 tctttgtggg gggaataaaa aagaagaaaa atcgagctcc aagctggtgc cctgccaagc
2641 ttcctcccct cccttcctag tccaagcact ccaccgtctg tgcagactgc ataacagcaa
2701 tttctggaaa caggctgaag aatctgggcc agtccagagg cagtggattc ctggtttatg
2761 tgtggtgggg tttttaggaa ttttattttt caccttaatt ctttcaacaa ctgccagctg
2821 tttgaagcac atctgtaata aacagcttct gtttgtaaaa tgagactgaa gttatcctct
2881 ccagagaaat tcctgaatct tctctgtagt tcaatgcctt cactgacagt ttggctcaaa
2941 aagtatgagt gtggtaaata ttaaagaatg ttaatacaag tgtaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa aaaaa
//