LOCUS BC044929 1710 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens popeye domain containing 2, mRNA (cDNA clone MGC:49863
IMAGE:5191230), complete cds.
ACCESSION BC044929
VERSION BC044929.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1710)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1710)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: a Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22209003.
FEATURES Location/Qualifiers
source 1..1710
/db_xref="H-InvDB:HIT000052907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49863 IMAGE:5191230"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1710
/gene="POPDC2"
/gene_synonym="POP2"
/db_xref="GeneID:64091"
/db_xref="HGNC:HGNC:17648"
/db_xref="MIM:605823"
CDS 168..1262
/gene="POPDC2"
/gene_synonym="POP2"
/codon_start=1
/product="popeye domain containing 2"
/protein_id="AAH44929.1"
/db_xref="GeneID:64091"
/db_xref="HGNC:HGNC:17648"
/db_xref="MIM:605823"
/translation="MSANSSRVGQLLLQGSACIRWKQDVEGAVYHLANCLLLLGFMGG
SGVYGCFYLFGFLSAGYLCCVLWGWFSACGLDIVLWSFLLAVVCLLQLAHLVYRLRED
TLPEEFDLLYKTLCLPLQVPLQTYKEIVHCCEEQVLTLATEQTYAVEGETPINRLSLL
LSGRVRVSQDGQFLHYIFPYQFMDSPEWESLQPSEEGVFQVTLTAETSCSYISWPRKS
LHLLLTKERYISCLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGPTAA
DAGPESEKGDEEVCEPAVSPPQATPTSLQQTPPCSTPPATTNFPAPPTRARLSRPDSG
ILASRIPLQSYSQVISRGQAPLAPTHTPEL"
BASE COUNT 390 a 477 c 430 g 413 t
ORIGIN
1 catcattcct tcccaaagcc accggaagca ttccttctag gaaaggtgga gtcggtagtg
61 agaagccgga ggtgagaaga cccctgagcg gatggattca ttcattttct gaatttccta
121 tgtgaggaca gtattagagc ccagtgaggc tttgagaggc cccaaagatg agcgccaaca
181 gcagcagagt gggccagctt ctcttgcagg gttcagcgtg cattaggtgg aagcaggatg
241 tggaaggggc tgtctaccac ctagccaact gcctcttact cctgggcttc atggggggca
301 gtggggtgta tggatgcttc tatctttttg gcttcctgag tgcaggttac ctgtgctgcg
361 tgctgtgggg ctggttcagt gcctgtggcc tggacattgt tctttggagc ttcctgctgg
421 ctgtggtctg cctgctccag ctggcacacc tggtataccg cctgcgtgag gacaccctcc
481 ctgaggagtt tgacctcctc tacaagacgc tgtgcctgcc cttgcaggtg cccctacaga
541 catacaagga gattgttcac tgctgcgagg agcaggtctt aactctggcc actgaacaga
601 cctatgctgt ggagggtgag acacccatca accgcctgtc cctgctgctc tctggccggg
661 ttcgtgtgag ccaggatggg cagtttctgc actacatctt tccataccag ttcatggact
721 ctcctgagtg ggaatcacta cagccttctg aggagggggt gttccaggtc actctgactg
781 ctgagacctc atgtagctac atttcctggc cccggaaaag tctccatctt cttctgacca
841 aagagcgata catctcctgc ctcttctcgg ctctgctggg atatgacatc tcggagaagc
901 tctacactct caatgacaag ctctttgcta agtttgggct gcgctttgac atccgccttc
961 ccagcctcta ccatgtcctg ggtcccactg ctgcagatgc tggaccagag tccgagaagg
1021 gtgatgagga agtctgtgag ccagctgtgt cccctcctca ggccacaccc acctctctcc
1081 agcaaacacc cccttgttct acccctccag ctaccaccaa ctttcctgca cctcctaccc
1141 gggccaggtt gtccaggcca gacagtggca tactggcttc tagaattcct ctccagagct
1201 actctcaagt tatatccagg ggacaggccc ctttggctcc aacccacacg cctgaacttt
1261 aaggatcatt ggactatctt ctctgtggcc agcgcagctc tcttctgtgt tcacagaatg
1321 gccactgata ggcatgcctc ttttcccacc cactggaagg ctcacaggca aggtgagaga
1381 ggacacagaa ggtgccaaca ctgtcgctac agtaagaacc tgaagtgact ttgagaaatt
1441 caccctcaca aaccttcctt caggagcagg cattggtagt gcagaggcac agattccgtc
1501 ctttaccagc tgcagaatct tgggcaagtt acatagcctc tgtgagcctc atcggtaaac
1561 agtgggggtt atgaaaccca cctcacaggg ttgttgtgag gatccaatga gttgatttag
1621 gtaagcacct agcacatgcc gtggcaccaa gtaagcactc aataaatcac tcaactccta
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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