LOCUS BC044602 2195 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), short basic
domain, secreted, (semaphorin) 3B, mRNA (cDNA clone IMAGE:4815097),
partial cds.
ACCESSION BC044602
VERSION BC044602.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2195)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2195)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: b Column: 2.
FEATURES Location/Qualifiers
source 1..2195
/db_xref="H-InvDB:HIT000097877"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4815097"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..2195
/gene="SEMA3B"
/gene_synonym="LUCA-1"
/gene_synonym="SemA"
/gene_synonym="SEMA5"
/gene_synonym="semaV"
/db_xref="GeneID:7869"
/db_xref="MIM:601281"
CDS <1..1724
/gene="SEMA3B"
/gene_synonym="LUCA-1"
/gene_synonym="SemA"
/gene_synonym="SEMA5"
/gene_synonym="semaV"
/codon_start=3
/product="SEMA3B protein"
/protein_id="AAH44602.1"
/db_xref="GeneID:7869"
/db_xref="MIM:601281"
/translation="HGARGWVVRHCDPGCCARTTGRGSSAWVSHQEARPGPADPCLLP
RSEPKFVKVFWIRESENPDDDKIYFFFRETAVEAAPALGRLSVSRVGQICRNDVGDQR
SLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDHRTPLLYAVFSTSSIFQG
SAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSYQGRVPYPRPGMCPSKTFGTFSSTKDF
PDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRVAAADGHYDVLFIGT
DVGTVLKVISVPKGSRPSAEGLLLEELHVFEDSAAVTSMQISSKRHQLYVASRSAVAQ
IALHRCAAHGRVCTECCLARDPYCAWDGVACTRFQPSAKRRFRRQDVRNGDPSTLCSG
DSSRPALLEHKVFGVEGSSAFLECEPRSLQARVEWTFQRAGVTAHTQVLAEERTERTA
RGLLLRRLRRRDSGVYLCATVEQGFTQPLRRLSLHVLSATQAERLARAEEAAPAAPPG
PKLWYRDFLQLVEPGGGGSANSLRMCRPQPALQSLPLESRRKGRNRRTHAPEPRAERG
PRSATHW"
BASE COUNT 420 a 680 c 738 g 357 t
ORIGIN
1 gacatggtgc tagaggttgg gtggtcagac actgtgatcc cgggtgctgt gcccgcacta
61 cgggaagggg aagcagcgcg tgggtctcgc atcaggaggc aaggccagga cccgctgacc
121 catgcctcct gccgcggtca gagcccaagt ttgtcaaggt attttggatc cgggagagcg
181 agaacccaga cgacgacaaa atctacttct tctttcgtga gacggcggta gaggcggcgc
241 cggcactggg acgcctgtcc gtgtcccgcg ttggccagat ctgccggaac gacgtgggcg
301 accagcgcag cctggtcaac aagtggacga cgttcctgaa ggcgcggctg gtgtgctcgg
361 tgcccggcgt cgagggcgac acccacttcg atcagctcca ggatgtgttt ctgttgtcct
421 cgcgggacca ccggaccccg ctgctctatg ccgtcttctc cacgtccagc atcttccagg
481 gctctgcggt gtgcgtgtac agcatgaacg acgtgcgccg ggccttcttg ggaccctttg
541 cacacaagga ggggcccatg caccagtggg tgtcatacca gggtcgcgtc ccctacccgc
601 ggccaggcat gtgccccagc aagacctttg gcaccttcag ttccaccaag gacttcccag
661 acgatgtcat ccagtttgcg cggaaccacc ccctcatgta caactctgtc ctgcccactg
721 gggggcgccc tcttttccta caagttggag ccaattacac cttcactcaa attgccgcgg
781 acagggttgc agccgctgac ggacactatg acgtcctctt cattggcaca gacgttggca
841 cggtgctgaa ggtgatctcg gtccccaagg gcagtaggcc cagcgcagag gggctgctcc
901 tggaggagct gcacgtgttt gaggactcgg ccgctgtcac cagcatgcaa atttcttcca
961 agaggcacca gctgtacgta gcctcgcgga gcgcggtggc ccagatcgcg ttgcaccgct
1021 gcgctgccca cggccgcgtc tgcaccgaat gctgtctggc gcgtgacccc tactgcgcct
1081 gggacggggt cgcgtgcacg cgcttccagc ccagtgccaa gaggcggttc cggcggcaag
1141 acgtaaggaa tggcgacccc agcacgttgt gctccggaga ctcgtctcgt cccgcgctgc
1201 tggaacacaa ggtgttcggc gtggagggca gcagcgcctt tctggagtgt gagccccgct
1261 cgctgcaggc gcgcgtggag tggactttcc agcgcgcagg ggtgacagcc cacacccagg
1321 tgctggcaga ggagcgcacc gagcgcaccg cccggggact actgctgcgc aggctgcggc
1381 gccgggactc gggcgtgtac ttgtgcgcca ccgtcgagca gggctttacg caaccgctgc
1441 gtcgcctgtc gctgcacgtg ttgagtgcta cgcaggccga acgactggcg cgggccgagg
1501 aggctgcgcc cgccgcgccg ccgggcccca aactctggta ccgggacttt ctgcagctgg
1561 tggagccggg cggaggtggc agcgcgaact ccctgcgcat gtgccgcccg cagcctgcgc
1621 tgcagtcact gcccctggag tcgcggagaa agggccgtaa ccggaggacc cacgcccctg
1681 agcctcgcgc tgagcggggg ccgcgcagcg caacgcactg gtgaccagac tgtccccacg
1741 ccgggaacca agcaggagac gacaggcgag agaggagcca gacagaccct gaaaagaagg
1801 acgggttggg gccgggcaca ttgggggtca ccggccgatg gagacaccaa ccgacaggcc
1861 ctggctgagg gcagctgcgc gggcttattt attaacagga taacccttga atgtagcagc
1921 cccgggaggg cggcacaggt cgggcgcagg attcagccgg agggaaggga cggggaagcc
1981 gagctccaga gcaacgacca gggccgagga ggtgcctgga gtgcccaccc tgggagacag
2041 accccacctc cttgggtagt gagcagtgag cagaaagctg tgaacaggct gggctgctgg
2101 aggtggggcg aggcaggccg actgtactaa agtaacgcaa taaacgcatt atcagccaaa
2161 gctggaatgg ccccagcaga aaaaaaaaaa aaaaa
//