LOCUS BC044602 2195 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B, mRNA (cDNA clone IMAGE:4815097), partial cds. ACCESSION BC044602 VERSION BC044602.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2195) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2195) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 106 Row: b Column: 2. FEATURES Location/Qualifiers source 1..2195 /db_xref="H-InvDB:HIT000097877" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4815097" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene <1..2195 /gene="SEMA3B" /gene_synonym="LUCA-1" /gene_synonym="SemA" /gene_synonym="SEMA5" /gene_synonym="semaV" /db_xref="GeneID:7869" /db_xref="MIM:601281" CDS <1..1724 /gene="SEMA3B" /gene_synonym="LUCA-1" /gene_synonym="SemA" /gene_synonym="SEMA5" /gene_synonym="semaV" /codon_start=3 /product="SEMA3B protein" /protein_id="AAH44602.1" /db_xref="GeneID:7869" /db_xref="MIM:601281" /translation="HGARGWVVRHCDPGCCARTTGRGSSAWVSHQEARPGPADPCLLP RSEPKFVKVFWIRESENPDDDKIYFFFRETAVEAAPALGRLSVSRVGQICRNDVGDQR SLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDHRTPLLYAVFSTSSIFQG SAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSYQGRVPYPRPGMCPSKTFGTFSSTKDF PDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRVAAADGHYDVLFIGT DVGTVLKVISVPKGSRPSAEGLLLEELHVFEDSAAVTSMQISSKRHQLYVASRSAVAQ IALHRCAAHGRVCTECCLARDPYCAWDGVACTRFQPSAKRRFRRQDVRNGDPSTLCSG DSSRPALLEHKVFGVEGSSAFLECEPRSLQARVEWTFQRAGVTAHTQVLAEERTERTA RGLLLRRLRRRDSGVYLCATVEQGFTQPLRRLSLHVLSATQAERLARAEEAAPAAPPG PKLWYRDFLQLVEPGGGGSANSLRMCRPQPALQSLPLESRRKGRNRRTHAPEPRAERG PRSATHW" BASE COUNT 420 a 680 c 738 g 357 t ORIGIN 1 gacatggtgc tagaggttgg gtggtcagac actgtgatcc cgggtgctgt gcccgcacta 61 cgggaagggg aagcagcgcg tgggtctcgc atcaggaggc aaggccagga cccgctgacc 121 catgcctcct gccgcggtca gagcccaagt ttgtcaaggt attttggatc cgggagagcg 181 agaacccaga cgacgacaaa atctacttct tctttcgtga gacggcggta gaggcggcgc 241 cggcactggg acgcctgtcc gtgtcccgcg ttggccagat ctgccggaac gacgtgggcg 301 accagcgcag cctggtcaac aagtggacga cgttcctgaa ggcgcggctg gtgtgctcgg 361 tgcccggcgt cgagggcgac acccacttcg atcagctcca ggatgtgttt ctgttgtcct 421 cgcgggacca ccggaccccg ctgctctatg ccgtcttctc cacgtccagc atcttccagg 481 gctctgcggt gtgcgtgtac agcatgaacg acgtgcgccg ggccttcttg ggaccctttg 541 cacacaagga ggggcccatg caccagtggg tgtcatacca gggtcgcgtc ccctacccgc 601 ggccaggcat gtgccccagc aagacctttg gcaccttcag ttccaccaag gacttcccag 661 acgatgtcat ccagtttgcg cggaaccacc ccctcatgta caactctgtc ctgcccactg 721 gggggcgccc tcttttccta caagttggag ccaattacac cttcactcaa attgccgcgg 781 acagggttgc agccgctgac ggacactatg acgtcctctt cattggcaca gacgttggca 841 cggtgctgaa ggtgatctcg gtccccaagg gcagtaggcc cagcgcagag gggctgctcc 901 tggaggagct gcacgtgttt gaggactcgg ccgctgtcac cagcatgcaa atttcttcca 961 agaggcacca gctgtacgta gcctcgcgga gcgcggtggc ccagatcgcg ttgcaccgct 1021 gcgctgccca cggccgcgtc tgcaccgaat gctgtctggc gcgtgacccc tactgcgcct 1081 gggacggggt cgcgtgcacg cgcttccagc ccagtgccaa gaggcggttc cggcggcaag 1141 acgtaaggaa tggcgacccc agcacgttgt gctccggaga ctcgtctcgt cccgcgctgc 1201 tggaacacaa ggtgttcggc gtggagggca gcagcgcctt tctggagtgt gagccccgct 1261 cgctgcaggc gcgcgtggag tggactttcc agcgcgcagg ggtgacagcc cacacccagg 1321 tgctggcaga ggagcgcacc gagcgcaccg cccggggact actgctgcgc aggctgcggc 1381 gccgggactc gggcgtgtac ttgtgcgcca ccgtcgagca gggctttacg caaccgctgc 1441 gtcgcctgtc gctgcacgtg ttgagtgcta cgcaggccga acgactggcg cgggccgagg 1501 aggctgcgcc cgccgcgccg ccgggcccca aactctggta ccgggacttt ctgcagctgg 1561 tggagccggg cggaggtggc agcgcgaact ccctgcgcat gtgccgcccg cagcctgcgc 1621 tgcagtcact gcccctggag tcgcggagaa agggccgtaa ccggaggacc cacgcccctg 1681 agcctcgcgc tgagcggggg ccgcgcagcg caacgcactg gtgaccagac tgtccccacg 1741 ccgggaacca agcaggagac gacaggcgag agaggagcca gacagaccct gaaaagaagg 1801 acgggttggg gccgggcaca ttgggggtca ccggccgatg gagacaccaa ccgacaggcc 1861 ctggctgagg gcagctgcgc gggcttattt attaacagga taacccttga atgtagcagc 1921 cccgggaggg cggcacaggt cgggcgcagg attcagccgg agggaaggga cggggaagcc 1981 gagctccaga gcaacgacca gggccgagga ggtgcctgga gtgcccaccc tgggagacag 2041 accccacctc cttgggtagt gagcagtgag cagaaagctg tgaacaggct gggctgctgg 2101 aggtggggcg aggcaggccg actgtactaa agtaacgcaa taaacgcatt atcagccaaa 2161 gctggaatgg ccccagcaga aaaaaaaaaa aaaaa //