LOCUS       BC044464                2657 bp    mRNA    linear   VRT 15-JUL-2006
DEFINITION  Danio rerio nuclear VCP-like, mRNA (cDNA clone MGC:55732
            IMAGE:3816242), complete cds.
ACCESSION   BC044464
VERSION     BC044464.1
KEYWORDS    MGC.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2657)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
            cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Institute for Systems Biology
            http://www.systemsbiology.org
            contact: amadan@systemsbiology.org
            Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
            Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 102 Row: f Column: 19
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 27881915.
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="AB"
                     /db_xref="taxon:7955"
                     /clone="MGC:55732 IMAGE:3816242"
                     /tissue_type="Whole body, adult, (one male and one female,
                     including unfertilized eggs)"
                     /clone_lib="Sugano Kawakami zebrafish DRA"
                     /lab_host="DH10B"
                     /note="Vector: pME18S-FL3"
     gene            1..2657
                     /gene="nvl"
                     /gene_synonym="fa20g10"
                     /gene_synonym="wu:fa20g10"
                     /gene_synonym="zgc:55732"
                     /db_xref="GeneID:406805"
                     /db_xref="ZFIN:ZDB-GENE-040426-2871"
     CDS             129..2519
                     /gene="nvl"
                     /gene_synonym="fa20g10"
                     /gene_synonym="wu:fa20g10"
                     /gene_synonym="zgc:55732"
                     /codon_start=1
                     /product="nuclear VCP-like"
                     /protein_id="AAH44464.1"
                     /db_xref="GeneID:406805"
                     /db_xref="ZFIN:ZDB-GENE-040426-2871"
                     /translation="MKNRGGYNIDPRLKHRVHQYLKTRNDQYVDVSAMASELQQQFRI
                     EYGRRNRTAFRIQVEKVFALICSESDSEFSALENKHLAKRARRSPEDGDGSHVTASST
                     DSEDDIPEHEHTNHMNSSLTSLYQRGAANASSSSTIQRSLSDDWIIDKTGDRGQESIL
                     IDLCEEESSSTTNQRDSSRLEKEKKSVKQKRQKKNKLEEDSETSAGVPAKKSKVKGFE
                     LQFSSVKFEDFGGSDETLEEVCKLLIHMRHPEVYQRLGVVPPRGFLLHGPPGCGKTLL
                     AQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCILFIDEIDAITPK
                     RETASKDMERRIVAQLLTCMDDLNSMLEPAQVLVIGATNRPDSLDPALRRAGRFDREI
                     CLGIPDEGARMKILKTLCRKIRLPDDFDFRHLARLTPGYVGADLMALCREAAMNAVNR
                     ILLEPTTEDQITPTLALARLLDLLKSSVSLSEDQLAALCVLMSDFSSSLVRVQPSAKR
                     EGFATVPDVTWADVGALQDVREELHMAIMAPIQNPEQFKALGLSAPAGLLLAGPPGCG
                     KTLLAKAVANASGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDA
                     LCPRRSEHESGASVRVVNQLLTEMDGMENRRQVFIMAATNRPDIIDPAVLRPGRLDKT
                     LYVGLPPAADRHAILNTITKGGTKPQLDSDVSLEEIAHDARCETFTGADLSALVREAC
                     VNALRVHLDPAQTHTESAKDIRVSRVHFEDAFKKVRPSVSKKDQLMYERLRETLSR"
BASE COUNT          676 a          682 c          760 g          539 t
ORIGIN      
        1 gagatgcaac agaggaaaat ataaacgtgt gctgctcttc ctcctcgttt aaaggtttat
       61 ttgtgtggat aataacacag atatattaat aatatctcct actgtcgaca ctccgcgagg
      121 gatgagccat gaagaaccgc ggcggttata atattgaccc gagactcaaa cacagagtcc
      181 atcagtacct gaaaacacgt aatgatcagt atgtggacgt ttcagcgatg gcgtctgagc
      241 ttcagcagca gttccggatt gagtacggcc ggaggaacag gacggctttc aggattcagg
      301 tggagaaagt gtttgcgctg atatgcagcg agtctgattc tgaattctct gctctggaaa
      361 acaaacatct ggcaaaaaga gcaagacgca gcccagagga tggcgacggc agccacgtca
      421 cagcgtccag cacagacagc gaggacgata ttcctgaaca tgaacacacg aatcacatga
      481 acagttccct gacgtcactg tatcagagag gagcagcaaa cgccagcagc agctcgacga
      541 ttcagaggag cctcagcgat gactggatca ttgataaaac tggagaccga ggacaggaga
      601 gcatcctcat cgatctgtgt gaggaagagt cctccagcac cacgaatcag agagattcat
      661 caaggctgga gaaggaaaag aagagtgtaa agcagaagag gcagaagaag aacaaactgg
      721 aggaggattc agaaaccagt gctggagtac ctgctaaaaa gagtaaggtg aaggggttcg
      781 agcttcagtt ctcctcagtc aagtttgagg atttcggtgg cagcgatgaa actctggagg
      841 aggtgtgtaa gctgctgatc cacatgaggc acccagaggt gtaccagcgg ctcggtgtgg
      901 ttcctccacg tgggttcctg ctgcacggcc cgcccggatg cgggaaaaca ctgctggctc
      961 aggctgtggc tggagagacc gctctgccgc tgctgaagat ctctgctcca gagctggtgt
     1021 ctggagtgtc aggagagtct gagcagaagc tgcgggagct gtttgagcag gccatcagct
     1081 ccgcgccctg catcctcttc atcgatgaga tcgacgccat cacacccaaa cgagagacgg
     1141 cgtctaaaga catggagcgg aggatcgtgg cgcagctgct cacctgcatg gatgacctga
     1201 actcgatgtt ggagccggct caggtgctgg tcatcggagc cacgaaccgt ccggactcgt
     1261 tggacccggc tctgcgacgc gccgggaggt ttgatcgtga aatctgtctg gggattcctg
     1321 atgagggcgc acggatgaag atcctgaaga ctctgtgccg taaaatcagg ctgccggacg
     1381 acttcgactt caggcatctg gcgcggctca ctccggggta tgtgggagca gatctgatgg
     1441 cgctgtgtcg agaagcagcc atgaacgccg tcaacagaat actgctggag cccaccactg
     1501 aagaccagat cacaccgaca ttagctctgg ctcgtctgct ggatctcctg aagagcagtg
     1561 tttctctgag tgaggatcag ctggcggctc tctgcgtcct catgtcagac ttcagctctt
     1621 cactagtcag agtccagccg tccgctaagc gtgaggggtt cgccacagtg ccggatgtca
     1681 cctgggcgga tgtaggagcg ctgcaggacg tccgtgagga gctccacatg gccatcatgg
     1741 ctcccatcca aaacccggag cagttcaagg ctctgggtct gagcgctccc gctggactcc
     1801 tgctggccgg accccccgga tgtggaaaga ccctgttagc caaagccgtc gctaatgcat
     1861 ccggcttaaa cttcatctct gtcaagggtc cagagctgct gaacatgtat gtgggcgaga
     1921 gcgagcgcgc cgtgcggcag gtcttccaga gaggcaggaa ctcagcgccc tgcgtcatct
     1981 tcttcgatga gatcgacgct ctctgtcctc gccgctccga gcacgagtca ggagccagtg
     2041 tccgtgtggt caatcagctg ctcacggaga tggacggtat ggagaatcgc agacaggttt
     2101 tcatcatggc tgccactaac agacccgaca tcattgaccc ggctgtgctc agacctggac
     2161 gactggacaa aactctgtat gtgggtttgc cgccggccgc tgaccgacac gccatcctca
     2221 acaccatcac taagggtgga accaaacccc agctggactc agatgtcagt ctggaggaga
     2281 tcgcccatga cgctcgctgc gagaccttca caggtgcaga tctgtcagcg ctggtgcgcg
     2341 aggcgtgtgt gaacgcactg agagttcacc tggaccccgc acaaacacac acagagtcag
     2401 cgaaggacat cagagtgagc agagttcact ttgaagacgc cttcaagaaa gttcgtccat
     2461 ctgtgtctaa gaaggaccag ttaatgtatg aaagactgcg ggaaacgctg agcagatgac
     2521 caccggctaa cattaatgca ctataataat cctgatgctc attgtagacc agtgcttttt
     2581 acagaactga acgctctgca gtggtgtaga taataaatcc tgcttcacaa tgttttcaca
     2641 aaaaaaaaaa aaaaaaa
//