LOCUS BC044464 2657 bp mRNA linear VRT 15-JUL-2006 DEFINITION Danio rerio nuclear VCP-like, mRNA (cDNA clone MGC:55732 IMAGE:3816242), complete cds. ACCESSION BC044464 VERSION BC044464.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 2657) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2657) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami cDNA Library Preparation: Dr. Sumio Sugano and Dr. Ko-ichi Kawakami cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 102 Row: f Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27881915. FEATURES Location/Qualifiers source 1..2657 /organism="Danio rerio" /mol_type="mRNA" /strain="AB" /db_xref="taxon:7955" /clone="MGC:55732 IMAGE:3816242" /tissue_type="Whole body, adult, (one male and one female, including unfertilized eggs)" /clone_lib="Sugano Kawakami zebrafish DRA" /lab_host="DH10B" /note="Vector: pME18S-FL3" gene 1..2657 /gene="nvl" /gene_synonym="fa20g10" /gene_synonym="wu:fa20g10" /gene_synonym="zgc:55732" /db_xref="GeneID:406805" /db_xref="ZFIN:ZDB-GENE-040426-2871" CDS 129..2519 /gene="nvl" /gene_synonym="fa20g10" /gene_synonym="wu:fa20g10" /gene_synonym="zgc:55732" /codon_start=1 /product="nuclear VCP-like" /protein_id="AAH44464.1" /db_xref="GeneID:406805" /db_xref="ZFIN:ZDB-GENE-040426-2871" /translation="MKNRGGYNIDPRLKHRVHQYLKTRNDQYVDVSAMASELQQQFRI EYGRRNRTAFRIQVEKVFALICSESDSEFSALENKHLAKRARRSPEDGDGSHVTASST DSEDDIPEHEHTNHMNSSLTSLYQRGAANASSSSTIQRSLSDDWIIDKTGDRGQESIL IDLCEEESSSTTNQRDSSRLEKEKKSVKQKRQKKNKLEEDSETSAGVPAKKSKVKGFE LQFSSVKFEDFGGSDETLEEVCKLLIHMRHPEVYQRLGVVPPRGFLLHGPPGCGKTLL AQAVAGETALPLLKISAPELVSGVSGESEQKLRELFEQAISSAPCILFIDEIDAITPK RETASKDMERRIVAQLLTCMDDLNSMLEPAQVLVIGATNRPDSLDPALRRAGRFDREI CLGIPDEGARMKILKTLCRKIRLPDDFDFRHLARLTPGYVGADLMALCREAAMNAVNR ILLEPTTEDQITPTLALARLLDLLKSSVSLSEDQLAALCVLMSDFSSSLVRVQPSAKR EGFATVPDVTWADVGALQDVREELHMAIMAPIQNPEQFKALGLSAPAGLLLAGPPGCG KTLLAKAVANASGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDA LCPRRSEHESGASVRVVNQLLTEMDGMENRRQVFIMAATNRPDIIDPAVLRPGRLDKT LYVGLPPAADRHAILNTITKGGTKPQLDSDVSLEEIAHDARCETFTGADLSALVREAC VNALRVHLDPAQTHTESAKDIRVSRVHFEDAFKKVRPSVSKKDQLMYERLRETLSR" BASE COUNT 676 a 682 c 760 g 539 t ORIGIN 1 gagatgcaac agaggaaaat ataaacgtgt gctgctcttc ctcctcgttt aaaggtttat 61 ttgtgtggat aataacacag atatattaat aatatctcct actgtcgaca ctccgcgagg 121 gatgagccat gaagaaccgc ggcggttata atattgaccc gagactcaaa cacagagtcc 181 atcagtacct gaaaacacgt aatgatcagt atgtggacgt ttcagcgatg gcgtctgagc 241 ttcagcagca gttccggatt gagtacggcc ggaggaacag gacggctttc aggattcagg 301 tggagaaagt gtttgcgctg atatgcagcg agtctgattc tgaattctct gctctggaaa 361 acaaacatct ggcaaaaaga gcaagacgca gcccagagga tggcgacggc agccacgtca 421 cagcgtccag cacagacagc gaggacgata ttcctgaaca tgaacacacg aatcacatga 481 acagttccct gacgtcactg tatcagagag gagcagcaaa cgccagcagc agctcgacga 541 ttcagaggag cctcagcgat gactggatca ttgataaaac tggagaccga ggacaggaga 601 gcatcctcat cgatctgtgt gaggaagagt cctccagcac cacgaatcag agagattcat 661 caaggctgga gaaggaaaag aagagtgtaa agcagaagag gcagaagaag aacaaactgg 721 aggaggattc agaaaccagt gctggagtac ctgctaaaaa gagtaaggtg aaggggttcg 781 agcttcagtt ctcctcagtc aagtttgagg atttcggtgg cagcgatgaa actctggagg 841 aggtgtgtaa gctgctgatc cacatgaggc acccagaggt gtaccagcgg ctcggtgtgg 901 ttcctccacg tgggttcctg ctgcacggcc cgcccggatg cgggaaaaca ctgctggctc 961 aggctgtggc tggagagacc gctctgccgc tgctgaagat ctctgctcca gagctggtgt 1021 ctggagtgtc aggagagtct gagcagaagc tgcgggagct gtttgagcag gccatcagct 1081 ccgcgccctg catcctcttc atcgatgaga tcgacgccat cacacccaaa cgagagacgg 1141 cgtctaaaga catggagcgg aggatcgtgg cgcagctgct cacctgcatg gatgacctga 1201 actcgatgtt ggagccggct caggtgctgg tcatcggagc cacgaaccgt ccggactcgt 1261 tggacccggc tctgcgacgc gccgggaggt ttgatcgtga aatctgtctg gggattcctg 1321 atgagggcgc acggatgaag atcctgaaga ctctgtgccg taaaatcagg ctgccggacg 1381 acttcgactt caggcatctg gcgcggctca ctccggggta tgtgggagca gatctgatgg 1441 cgctgtgtcg agaagcagcc atgaacgccg tcaacagaat actgctggag cccaccactg 1501 aagaccagat cacaccgaca ttagctctgg ctcgtctgct ggatctcctg aagagcagtg 1561 tttctctgag tgaggatcag ctggcggctc tctgcgtcct catgtcagac ttcagctctt 1621 cactagtcag agtccagccg tccgctaagc gtgaggggtt cgccacagtg ccggatgtca 1681 cctgggcgga tgtaggagcg ctgcaggacg tccgtgagga gctccacatg gccatcatgg 1741 ctcccatcca aaacccggag cagttcaagg ctctgggtct gagcgctccc gctggactcc 1801 tgctggccgg accccccgga tgtggaaaga ccctgttagc caaagccgtc gctaatgcat 1861 ccggcttaaa cttcatctct gtcaagggtc cagagctgct gaacatgtat gtgggcgaga 1921 gcgagcgcgc cgtgcggcag gtcttccaga gaggcaggaa ctcagcgccc tgcgtcatct 1981 tcttcgatga gatcgacgct ctctgtcctc gccgctccga gcacgagtca ggagccagtg 2041 tccgtgtggt caatcagctg ctcacggaga tggacggtat ggagaatcgc agacaggttt 2101 tcatcatggc tgccactaac agacccgaca tcattgaccc ggctgtgctc agacctggac 2161 gactggacaa aactctgtat gtgggtttgc cgccggccgc tgaccgacac gccatcctca 2221 acaccatcac taagggtgga accaaacccc agctggactc agatgtcagt ctggaggaga 2281 tcgcccatga cgctcgctgc gagaccttca caggtgcaga tctgtcagcg ctggtgcgcg 2341 aggcgtgtgt gaacgcactg agagttcacc tggaccccgc acaaacacac acagagtcag 2401 cgaaggacat cagagtgagc agagttcact ttgaagacgc cttcaagaaa gttcgtccat 2461 ctgtgtctaa gaaggaccag ttaatgtatg aaagactgcg ggaaacgctg agcagatgac 2521 caccggctaa cattaatgca ctataataat cctgatgctc attgtagacc agtgcttttt 2581 acagaactga acgctctgca gtggtgtaga taataaatcc tgcttcacaa tgttttcaca 2641 aaaaaaaaaa aaaaaaa //