LOCUS BC043603 4394 bp mRNA linear HTC 13-APR-2006
DEFINITION Homo sapiens family with sequence similarity 44, member A, mRNA
(cDNA clone IMAGE:5503684), with apparent retained intron.
ACCESSION BC043603
VERSION BC043603.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4394)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4394)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: d Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22507398
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..4394
/db_xref="H-InvDB:HIT000097790"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5503684"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 1352 a 995 c 925 g 1122 t
ORIGIN
1 ctggttccgt aacaacatcc cgttggcttc cctcaggcgg cgggaccagt gcagccgccg
61 cctcccagga tcgtccgccg gtcagggccc ttgccctccc cggcacaggc caccatggcc
121 accaacccac agccgcagcc gcctcctccg gcgccgccgc ctcccccgcc gcagccgcag
181 ccgcagccac cgccgccgcc gccgggcccc ggggctggcc ccggcgcggg cggggcgggc
241 ggcgcgggtg cgggcgccgg ggacccgcag ctcgtggaca tgatcgtgaa ccacctcaag
301 agccaggggc tcttcgacca gttccgcaga gactgcctgg ccgacgtgga caccaagagt
361 ctcgccctgt cgccaggctg gaatgcaatg gcgtgatctc ggctcactgc aacctccgcc
421 tcccgggttc aagcgactct cctgtctcag cctcccaagt agctgggatt acaagcgcat
481 gccaccacgc cctgctaatt tttgtatttt tagtagacac aaggtttcac cgtgttggcc
541 aggatggtct cgatctcctg acctcgtgat tcgcccagta ggcatgagcc accgcgcccg
601 gtcgagggtt ttctcatagt atgtttagtt gttctgagga gctttgtatc tttgagaaat
661 gcatgtttac aacatccaca gtttcttcta aagctttcag gtgaactgca cacagttcca
721 ctatgtcttc tggggaaact cttgaatatc ctggtacatc ttcctttata aggactcata
781 ctgggcccac tatgtaaaac gtggtttttc gggatattgg aggttttgca ccacagagaa
841 ttcaattcac ttgggagtgt tcatctattt aggaagtata gttttttact tttgtcttca
901 ggaatatgca ctgctacctt ttagaaataa tttctattgc ctttattatt tttgttgtta
961 tttaatggga aaaggttaga catggccagg taaatgttat caaataaagt tagttattcg
1021 tattcaacaa gtggaatttt tactttgctg ttctcagaaa cccatgaatc tgtgtgttct
1081 cagaaaccca tgaatcatta tgtatacaaa ttaaaaattg taatgtactg ctgcaatgtc
1141 tgaggctcaa cttttttatt atcctattcc cacaaaatgt tattggtatg tgtctataat
1201 atccctgcca gacccttcaa agtaaaggat taaaaccttt tttggaggga aggagggaag
1261 cacagtatct ctgatcatct aatgaaagtt aggaccttct ctcaagaaaa atgcgcaagt
1321 aacacattaa aacgctgttt ttctacttca gaatggtcaa ctataggcaa tttcatgaga
1381 atcaatctaa taacatatac agtttcagtg agttcaggaa ccatggaata agaacctatt
1441 ttaatgttct tagcctcttt tttgaggtca agaattgaat gatattgtta caacaaaact
1501 cttccattcc gaggcacagt acttgtttat atgaacaagg tttctcaggg cgcatgacta
1561 taaaaattag aaataggaat agaattgatg atcaaccctt cttctagtaa taagacatat
1621 tcagccacag atgcaggaac tttaaaaagc aacagtatgg ccaggcccgg tggctcatgc
1681 ctggccaccg tgggccaaag tagaagattc cctgttcatg caaagaacca tcactttaat
1741 ggaatccttg agtttcatct gccacttgaa cctcaaagac tgacctgctt tctgtcaaaa
1801 agtcttaact tgtagcatat agagttatag tggattatgt ctgtcacgtg catatttaag
1861 aatgaagaca tttgatacct gccaggtgct aagagcaaaa ctgtcatcca gtttagtgtg
1921 tttaaaccag gatgagaagt accaaagtct gctgctacac cagaagacca cagaaccctg
1981 gtcttctggg aggccgaggt gggtggatca ttagaggtca ggagttcgag gccaacctga
2041 ccaaaatggt gaaaccccat ctctagtaaa aatacaaaaa aagtagccat gtatggtggc
2101 acatgcctgt agtcccagct actcgggagg ctgaggcagg agaattgctt gaagccagga
2161 gacagaggtt gcagttagcc gagattgtgc cagtgcactc cagcctggga gacagaacaa
2221 gacttggtct aaaaaacaaa aatttttaaa aagcaacaat acacattttt caatacagtt
2281 gcatatacta tttaataatt atgaaaattt ctaatatttc tgttgctttg agaaattaga
2341 actgaaatga caccctccca gacaaaaaag aacactcagc tatggttgac gttctggtgc
2401 tcagacgcta gcttaaactc tcccacaaaa tctctctctc tctccccctc cctgccacta
2461 acctctgtac ctgctcctgg ttatgttaca ggttatgttc tggtacttcc tttaccccat
2521 gactctctcc ttctcttcta ctcccttagt tagcaattag gtagatttta atttgattta
2581 aaagatttgt tctcattgaa taccatttta tacttcattt tcttatttga aaaaaaaaaa
2641 aatgtattcc cccctgcttc ccaaaaagcc aaagttttct tcatcagaac ataacattca
2701 tatcaatatg atgagtgggc caaagtagaa gattccctgt tcatgcaaag aaccatcact
2761 ttaatggaat ccttgagttt catctgccac ttgaacctca aagactgacc tgctttctgt
2821 caaaaagtct taacttgtag catatagagt tatagtggat tatgtctgtc acatgcatat
2881 ttaagaatga agacatttga tacctgccag gtgctaagag caaaactgtc atccagttta
2941 gtgtgtttaa accaggatga gaagtaccaa agtctgctgc tacaccagaa gaccatagaa
3001 cccccctcca aactgtccag ggtcattgat agtccttaac caggagagag atctgactgt
3061 aacagaccaa atcagccctt cccacccaaa gaaatggaac catgggcaac cctaagctcc
3121 aactactgca aagactcctc cgttatagac taccagtttc cagatctctg gagcaagctt
3181 agtggttaca aagccattct gtctcctttg cactgattag catctggagc gtgtgaggag
3241 ggatgatcaa gaggcccttc agggagctcg ccagccagcc tgcgtatcag aatctgagac
3301 agcgtgttga caactttgtt gcaaatcact tggcaactca cacatggagt ccgcatctca
3361 ataagaacca gctaagaaac aacattagac aacaagtcct caaatcagga atgttggagt
3421 ctggtattga ccgaattatt tctcaggttg tggacccaaa gatcaaccac acattcagac
3481 ctcaggtaga gaaagctgtg catgagtttt tggccacgct aaatcacaaa gaggaaggaa
3541 gtggcaacac agctcccgat gatgagaaac cagacacttc ccttattaca caaggtgttc
3601 ctactcctgg gcccagtgct aatgtagcca atgatgccat gtcgatattg gaaaccataa
3661 cttctcttaa ccaagaagcc agtgctgcta gggcttcaac agaaacatca aatgccaaga
3721 ccagtgagag agcgtcaaaa aaacttccat ctcagccaac cactgatact agtactgaca
3781 aagaaagaac ttcagaggac atggctgata aagaaaaatc tacagctgac tctggaggtg
3841 aaggactgga aacagcccca aagtctgaag agttcagcga cctcccctgt ccagtcgaag
3901 aaattaaaaa ttacacaaaa gagcataata atttaattct gctaaataag gatgttcaac
3961 aggaaagcag tgagcaaaaa aataaatcaa cagacaaagg tgaaaagaag ccagacagca
4021 atgagaaagg agaaagaaag aaagaaaaga aggaaaagac tgaaaagaaa tttgatcact
4081 caaaaaagag tgaagataca cagaaagtta aagatgaaaa acaagcaaag gaaaaagaag
4141 tagagagttt aaaacttcct tcagaaaaga acagtaataa agctaaaact gttgaaggga
4201 caaaagaaga tttctctttg atagattctg atgtggatgg acttacagac atcacagtta
4261 gctctgttca taccagtgac ctttcatctt ttgaagaaga tactgaggag gaagttgtaa
4321 cgtctgatag catggaagaa ggagagatta cgtcagatga tgaagagaag aacaaacaga
4381 aaaaaaaaaa aaaa
//