LOCUS BC043599 1832 bp mRNA linear HUM 03-AUG-2004
DEFINITION Homo sapiens cell death-inducing DFFA-like effector c, mRNA (cDNA
clone IMAGE:5204770), complete cds.
ACCESSION BC043599
VERSION BC043599.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1832)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1832)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: b Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1832
/db_xref="H-InvDB:HIT000052836"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5204770"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1832
/gene="CIDEC"
/gene_synonym="CIDE-3"
/gene_synonym="FLJ20871"
/gene_synonym="Fsp27"
/db_xref="GeneID:63924"
CDS 432..617
/gene="CIDEC"
/gene_synonym="CIDE-3"
/gene_synonym="FLJ20871"
/gene_synonym="Fsp27"
/codon_start=1
/product="CIDEC protein"
/protein_id="AAH43599.1"
/db_xref="GeneID:63924"
/translation="MKATFYDTYSLSYDLHCCGAKRIMKSSRLMESKQLWSVNRKRQP
LMRLGGWGGKIPNSKGA"
BASE COUNT 475 a 452 c 437 g 468 t
ORIGIN
1 ggcagcccag ctgaaggcaa taagctgggc tcaccgctgc agcagagttc tgtgctagcc
61 gggcataggg gcgagagaag gcccagaggc gacgtcagag agaagcaact gcgccccggt
121 gaagagaagc tcgcccatca ccggctggga gccagctttc agtgaagatg gcagggccag
181 aactgttgct tgactccaac atctgcctct gggtggtcct acccatcgtt atcactcttc
241 gtagacatga tccgccacta cgtgtccatc ctgctggaga gcgacaagaa gctcacccag
301 gaacaagtat ctgacagggg acgaggcacc cacagtccct ctcccataag cctgccaaga
361 agattgatgt ggcccgtgta acctttgacc tgtacaagct gaacccacag gacttcattg
421 gctgcctgaa catgaaggcg actttttatg atacgtactc cctttcctat gatctgcact
481 gctgtggggc caaacgcatc atgaagagct cgaggctaat ggagtcaaag cagctgtggt
541 cagtgaacag gaaaaggcag cctttgatga ggctgggggg ctggggaggg aagattccaa
601 acagcaaagg agcttgagcc tcagtagggc ctggcgatcc tagtgggaga atggcctttc
661 ctggagaccc ccccgcacag ccaggagcag ctgtcgtcaa ggtgggctgt gtcccagccc
721 ctccagctca gccttttcat ctgttcaggc tggtgctcac gagtgcacag gacgcctttc
781 agaaggagga ttctaaatcc cgggggtctg taatggcaca gccacatgtc tgagcccaaa
841 acaagagaac cacatgtgtt tttgccacac ttcttgccag tgctgtccat atttgtgtac
901 ataatttttt gtttcttttc tttgagacag agtctcactc ttgtcaccca ggctggagtg
961 cagtggcacg atctcagctc actgcaacct ctgcctgctg ggttcaagca attcttctgc
1021 ctcagcctcc caagtagctg ggattacagg cacccaccac cacgcccagg taatttttat
1081 atttttcata gagatggggt ttcgccatat tggccaggct ggtctcaaac tcctgacctc
1141 aggtgatcca cctgcctcag cctccgaaag tgctgggatt acaggcgtga gacaccacac
1201 ccggctcttg tgcacgtaat tctattttat ttgagatgga gtcttgctct gttgcccagg
1261 ctggagtgca gtggcatgat ctcggctcac tgcaacctcc gcctctcagg ctcaagagat
1321 tcttgtgcct cagccttcca ggtagctggg actgtgcacc accatgctgg gctaatgttt
1381 gtatttttag tagagttggg gtttcactta gccaggctgg tctcgaactt ctggcctcaa
1441 aagatctgcc cgcctcggct tctcaaagtg ccttggattc ccaaagtgct gggattacag
1501 gtgtgaacca tcatgcctgg cctgtgcaca tcatttcaat aactgatatt ttgaaaacat
1561 tgtttattga cataatttat gtacaataaa atgtattatt tacaagtatg tctttcaata
1621 agttttggca aatttataca gttatgtaac caccatttct ggcaaaccag aaagctgcca
1681 tctgtccctt tatagtcatg taaatagact tttctaaaat gtcatgtaaa tagaatgata
1741 tatcttaaaa atttttattt ctatttttgt aaattaaaaa aagtatttag aaaaaaaaaa
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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