LOCUS BC043492 2298 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TNF receptor-associated factor 2, mRNA (cDNA clone
MGC:49872 IMAGE:5767794), complete cds.
ACCESSION BC043492
VERSION BC043492.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2298)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2298)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: j Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544228.
FEATURES Location/Qualifiers
source 1..2298
/db_xref="H-InvDB:HIT000052819"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49872 IMAGE:5767794"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2298
/gene="TRAF2"
/gene_synonym="MGC:45012"
/gene_synonym="TRAP"
/gene_synonym="TRAP3"
/db_xref="GeneID:7186"
/db_xref="HGNC:HGNC:12032"
/db_xref="MIM:601895"
CDS 58..1563
/gene="TRAF2"
/gene_synonym="MGC:45012"
/gene_synonym="TRAP"
/gene_synonym="TRAP3"
/codon_start=1
/product="TNF receptor-associated factor 2"
/protein_id="AAH43492.1"
/db_xref="GeneID:7186"
/db_xref="HGNC:HGNC:12032"
/db_xref="MIM:601895"
/translation="MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRP
FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES
LPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERS
LSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRF
HAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLE
KKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLKDLA
MADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL
RIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL"
BASE COUNT 486 a 658 c 732 g 422 t
ORIGIN
1 cttagttccg ggcgcgctgc gaccgttggg gctttgttcg cgggggtcac agctctcatg
61 gctgcagcta gcgtgacccc ccctggctcc ctggagttgc tacagcccgg cttctccaag
121 accctcctgg ggaccaagct ggaagccaag tacctgtgct ccgcctgcag aaacgtcctc
181 cgcaggccct tccaggcgca gtgtggccac cggtactgct ccttctgcct ggccagcatc
241 ctcagctctg ggcctcagaa ctgtgctgcc tgtgttcacg agggcatata tgaagaaggc
301 atttctattt tagaaagcag ttcggccttc ccagataatg ctgcccgcag ggaggtggag
361 agcctgccgg ccgtctgtcc cagtgatgga tgcacctgga aggggaccct gaaagaatac
421 gagagctgcc acgaaggccg ctgcccgctc atgctgaccg aatgtcccgc gtgcaaaggc
481 ctggtccgcc ttggtgaaaa ggagcgccac ctggagcacg agtgcccgga gagaagcctg
541 agctgccggc attgccgggc accctgctgc ggagcagacg tgaaggcgca ccacgaggtc
601 tgccccaagt tccccttaac ttgtgacggc tgcggcaaga agaagatccc ccgggagaag
661 tttcaggacc acgtcaagac ttgtggcaag tgtcgagtcc cttgcagatt ccacgccatc
721 ggctgcctcg agacggtaga gggtgagaaa cagcaggagc acgaggtgca gtggctgcgg
781 gagcacctgg ccatgctact gagctcggtg ctggaggcaa agcccctctt gggagaccag
841 agccacgcgg ggtcagagct cctgcagagg tgcgagagcc tggagaagaa gacggccact
901 tttgagaaca ttgtctgcgt cctgaaccgg gaggtggaga gggtggccat gactgccgag
961 gcctgcagcc ggcagcaccg gctggaccaa gacaagattg aagccctgag tagcaaggtg
1021 cagcagctgg agaggagcat tggcctcaag gacctggcga tggctgactt ggagcagaag
1081 gtcttggaga tggaggcatc cacctacgat ggggtcttca tctggaagat ctcagacttc
1141 gccaggaagc gccaggaagc tgtggctggc cgcatacccg ccatcttctc cccagccttc
1201 tacaccagca ggtacggcta caagatgtgt ctgcgtatct acctgaacgg cgacggcacc
1261 gggcgaggaa cacacctgtc cctcttcttt gtggtgatga agggcccgaa tgacgccctg
1321 ctgcggtggc ccttcaacca gaaggtgacc ttaatgctgc tcgaccagaa taaccgggag
1381 cacgtgattg acgccttcag gcccgacgtg acttcatcct cttttcagag gccagtcaac
1441 gacatgaaca tcgcaagcgg ctgccccctc ttctgccccg tctccaagat ggaggcaaag
1501 aattcctacg tgcgggacga tgccatcttc atcaaggcca ttgtggacct gacagggctc
1561 taactgcccc ctactggtgt ctgggggttg ggggcagcca ggcacagccg gctcacggag
1621 gggccaccac actgggccag ggtctcactg tacaagtggg caggggccgc gcttgggcgc
1681 ttgggagggt gtcggcctgc agccaagttc actgtcacgg gggaaggagc caccagccag
1741 tcctcagatt tcagagactg cggaggggct tggcagacgg tcttagccaa gggctgtggt
1801 ggcattggcc gagggtcttc gggtgcttcc cagcacaagc tgcccttgct gtcctgtgca
1861 gtgaagggag aggccctggg tgggggacac tcagagtggg agcacatccc agcagtgccc
1921 atgtagcagg agcacagtgg atggccttgt gtccctcggg catgacaggc agaaacgagg
1981 gctgctccag gagaagggcc tcctgctggc cagagcaagg aaggctgagc agcttggttc
2041 tcccctctgg cccctggaga gaagggggag cattcctaga cccctgggtg cttgtctgca
2101 cagagctctg gtctgtgcca ccttggccag gctggctgtg ggagggtctg gtcccacgcc
2161 gcctctgctc agaccactgt gtgggaggtg cacagcacag cctgcgggta aagtgtgaga
2221 gcttgccatc cagctcacga agacagagtt attaaaccat tcaaatctca aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaa
//