LOCUS BC043444 3044 bp mRNA linear HUM 27-JUL-2005
DEFINITION Homo sapiens lin-9 homolog (C. elegans), mRNA (cDNA clone
IMAGE:5297824), partial cds.
ACCESSION BC043444
VERSION BC043444.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3044)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3044)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC043444.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: p Column: 19.
FEATURES Location/Qualifiers
source 1..3044
/db_xref="H-InvDB:HIT000097693"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5297824"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..3044
/gene="LIN9"
/gene_synonym="BARA"
/gene_synonym="BARPsv"
/gene_synonym="Lin-9"
/gene_synonym="TGS"
/gene_synonym="TGS1"
/db_xref="GeneID:286826"
/db_xref="MIM:609375"
CDS <1..1632
/gene="LIN9"
/gene_synonym="BARA"
/gene_synonym="BARPsv"
/gene_synonym="Lin-9"
/gene_synonym="TGS"
/gene_synonym="TGS1"
/codon_start=1
/product="LIN9 protein"
/protein_id="AAH43444.1"
/db_xref="GeneID:286826"
/db_xref="MIM:609375"
/translation="KMAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWK
GRNTSSAVEMPFRNSKRSRLFSDEDDRQINTRSPKRNQRVAMVPQKFTATMSTPDKKA
SQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLT
RVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIP
LPLVIGTKVTARLRGVHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNE
PHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPIIDNDPLLGQSPWRSKISGSDTE
TLGGFPVEFLIQVTRLSKILMIKKEHIKKLREMNTEAEKLKSYSMPISIEFQRRYATI
VLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCVEEAQEIVRHANSS
TGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKSTIDASNI
SCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD"
BASE COUNT 1090 a 486 c 550 g 918 t
ORIGIN
1 aagatggcgg agctcgacca gttgcctgac gagagctctt cagcaaaagc ccttgtcagt
61 ttaaaagaag gaagcttatc taacacgtgg aatgaaaagt acagttcttt acagaaaaca
121 cctgtttgga aaggcaggaa tacaagctct gctgtggaaa tgcctttcag aaattcaaaa
181 cgaagtcgac ttttttctga tgaagatgat aggcaaataa atacaaggtc acctaaaaga
241 aaccagaggg ttgcaatggt tccacagaaa tttacagcaa caatgtcaac accagataag
301 aaagcttcac agaagattgg ttttcgatta cgtaatctgc tcaagcttcc taaagcacat
361 aaatggtgta tatacgagtg gttctattca aatatagata aaccactttt tgaaggtgat
421 aatgacttct gtgtatgtct aaaggaatct tttcctaatt tgaaaacaag aaagttaaca
481 agagtagaat ggggaaaaat tcggcggctt atgggaaaac cacggagatg ttcttctgca
541 ttttttgagg aagagagatc agcattaaaa cagaaacggc agaaaataag gctcttacaa
601 caaaggaaag ttgcagatgt ttcacaattc aaagatctcc cagatgaaat tcctttgcct
661 ctggttattg gaacgaaagt tacagcacga ttacgtggtg ttcatgatgg tttgttcact
721 ggacaaatag atgctgtgga tactcttaat gctacttata gagtaacttt tgataggaca
781 gggcttggaa cccataccat ccctgactat gaagttctca gtaatgaacc tcatgagaca
841 atgccaattg ctgcctttgg acaaaaacag cggccttctc gattttttat gaccccacca
901 cggttacatt atactcctcc tctccagtca ccaattatag ataatgatcc tttattagga
961 cagtcgccgt ggagaagtaa aatttctggc tctgacactg aaacattagg tggttttcca
1021 gtagaatttc ttatccaagt gaccagatta tcaaaaattc tcatgattaa aaaggaacat
1081 atcaagaaat taagggaaat gaacacagaa gcagaaaaat tgaaatcata ttccatgccc
1141 atcagcattg aatttcagcg gagatatgca acaattgttc tggagcttga acagctgaac
1201 aaggacctaa acaaagtttt gcataaagtt caacagtatt gctatgagct tgctccagac
1261 caggggctcc agcctgcaga tcagccaaca gatatgagac gcaggtgtgt ggaagaagca
1321 caggaaattg ttcggcatgc aaattcctca acaggacagc cctgcgttga aaatgaaaat
1381 ctgacagact taatttccag gcttacagct attttgttac aaattaagtg tctagcagaa
1441 ggaggagacc tgaattcctt tgaattcaaa tcacttacag actcattaaa tgatatcaag
1501 agtacaatag acgcttctaa tatcagttgc tttcagaata atgtagaaat ccatgttgca
1561 catattcaga gtggcctgag ccagatggga aacttacatg cctttgcagc aaataacacc
1621 aacagagact gagtaaagat ttcattattc caactgcacg ggacattgtt tttgagaagt
1681 tcttttcctt tatataggct tccaacacca aataacctaa ctgctggaaa acaagggaaa
1741 tttaaatctc caaataaggc attttaatag actgtactgc ttcttaaacc agcattgctg
1801 accagcatta tatttatttt tcttttatta ttcagatgca gtagcattgc ttatgttaca
1861 tatgtttata ttcacaaata tttttaaact gaaatatctg aacataatat aatttcgtgg
1921 aagaatacat tgaccatttt ttttaatgtg catgaattca ccgcaacaca tgcggacaac
1981 tgctgcaatg gagagtatga agaaacctgg tctttttatt catgtcggtg gcagtgtgga
2041 aattccatcc agaaaattac aactccactt gatttagttg atcaccatct cagtcttcaa
2101 aagataacat catgaggtgt gggaagtcct agttttaagg aaaccactga aatatagttg
2161 ggaaatgtgg actttacaag tatatgttat atatacttgc aatgtgacat ggttctgtag
2221 atcattttat aataataaat attttaattt atcataacat ataaaagaaa cctttgttgt
2281 ttgttgaaag aaaatgaagg aacaggggga aaaaaggtgc aaaatgctaa atttctaaaa
2341 atggatttgg catgtcttcc catcagttca ggtcaaaagt gcattgttgt gagatttatt
2401 aaaaaaaaaa tgataacaca ctattttcat atttttttgt ttatttgcac aacttttaaa
2461 ccagattact ggttaaaatc caacagtaca caatttataa agtaaaaaga ttttataagg
2521 aaaacaaata taataaccag tgctgtgaaa tgcagaagaa agggttgttt tggttgtttt
2581 tcttttttag gaaaacgctg cctaaaatgt taatcttgta aaaagtatgt atttggaatt
2641 ttcttcgttt taatagaata ttataaactc aaaatataaa tttttttcaa atttggagtt
2701 taagatatag ctgtagaggt ggttttaatt cctttagatg tctcataaaa tgagactttt
2761 tatatgttaa tgtataataa aactgaaaca agattatttt ccatttgaaa tttttgtata
2821 gtttaaaaag gcttccgtat tctttgttgg tattgtgcca ctgcagaact ttagtgcaga
2881 gtttatattt agctaaactg ttatgttaat taagaaatgc ataaatcttc tattcttaat
2941 atttgtaatt ctaaataaat tgatctatga aaattaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa aaaaaaaaaa aaaaaaggaa aaaaaaaaaa aaac
//