LOCUS BC043353 4197 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens splicing factor, arginine/serine-rich 15, mRNA (cDNA
clone MGC:49946 IMAGE:6019414), complete cds.
ACCESSION BC043353
VERSION BC043353.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4197)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4197)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40789228.
FEATURES Location/Qualifiers
source 1..4197
/db_xref="H-InvDB:HIT000097615"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49946 IMAGE:6019414"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4197
/gene="SFRS15"
/gene_synonym="DKFZP434E098"
/gene_synonym="SCAF4"
/gene_synonym="SRA4"
/db_xref="GeneID:57466"
/db_xref="HGNC:HGNC:19304"
CDS 384..3824
/gene="SFRS15"
/gene_synonym="DKFZP434E098"
/gene_synonym="SCAF4"
/gene_synonym="SRA4"
/codon_start=1
/product="splicing factor, arginine/serine-rich 15"
/protein_id="AAH43353.1"
/db_xref="GeneID:57466"
/db_xref="HGNC:HGNC:19304"
/translation="MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVV
QIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLC
PSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVK
VSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPA
LDNAVMAQVQAITAQLKTTPTQPSEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEE
SKKEDTTAVTTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQ
HQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLLPTPPFPPMAQPVIPPTPPVQQ
PFQASFQAQNEPLTQKPHQQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRS
GSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQVKPETASVCST
TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG
NYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSD
TLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQV
PPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLP
PGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAES
GDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGL
IPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGP
FVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQPPPSQQP
PPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDRR
EWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAGG
NKTVEPPISQVGNVDTASELEKGVSEAAVLKPSEELPAEATSSVEPEKDSGSAAEAPR
"
BASE COUNT 1145 a 1160 c 970 g 922 t
ORIGIN
1 cgctggagag agggagagag aggcccgccc gctcgccggc cgggccagtg tgagccagtg
61 cgtgagggcg cggggggccg tgtcagcgag acgcagagcg cagccgccac caccaaacgg
121 acatgttgaa gaccagcgct gccgccgcct ccttttcctc atcctgcgaa cgggactgag
181 agggggcccg ccacctctcc gcctctgcct cggccgcccg cctcgccgct tcgggcgcag
241 cctcttcctg cccgggcctc ggactccgcc gctcgtcgcc tccccccggc caccaggccc
301 ggctggtttc ccagccccgc tccgccgcgg cgcgaggtct atgtgaccgg cgggcccgga
361 gcagccgccg ccgcagcgcg aacatggacg ccgtcaacgc cttcaaccag gagctctttt
421 cgcttatgga tatgaaacct cccatctcta gagccaagat gattctcatc actaaagctg
481 ctattaaagc tattaagctt tataagcatg tagttcaaat agtagaaaag ttcatcaaaa
541 agtgtaaacc agaatacaag gttccgggat tatatgtaat tgactcaatt gtgcgacagt
601 ctcgtcatca gtttggaact gataaagatg tttttgggcc aagattctct aaaaacataa
661 ctgccacatt ccaatattta tatctttgtc catctgaaga taagagtaaa atagttcgtg
721 tgctgaacct ttggcaaaaa aatggagtgt tcaaaattga aattattcaa cctcttttgg
781 acatggcagc gggaaccagt aatgcagccc cagtagcaga aaatgttacc aataatgaag
841 gctcacctcc acctccagta aaagtttctt ctgaacctcc cacacaagcc actccaaact
901 ccgtcccagc tgtaccacag ttgcccagct ctgatgcttt tgctgctgtg gctcagctgt
961 ttcagacaac tcaaggccaa cagcttcagc agatccttca gacttttcaa cagcctccaa
1021 aaccacagtc tcctgccctt gacaatgctg tgatggctca ggttcaggct atcacagctc
1081 agttaaagac aactcctaca caaccatctg aacaaaaagc tgctttcccc ccacctgaac
1141 agaaaactgc atttgacaag aagttgcttg atagatttga ctatgatgat gagccagaag
1201 ctgtggaaga atcaaagaaa gaggatacca ctgccgtcac cacgacagca cctgctgccg
1261 cagtaccccc tgcacccacc gccaccgtgc ctgctgctgc tgcacccgct gctgcctctc
1321 ctcctcctcc acaggcacca tttggctttc ctggagatgg catgcagcag ccagcataca
1381 cacagcatca aaatatggat cagtttcagc cacgaatgat gggaatacaa caggatccaa
1441 tgcaccatca ggttccactt cctcctaatg gacaaatgcc aggatttgga cttcttccta
1501 cacctccatt tcctcccatg gctcagcctg tgattcctcc aactccacca gtgcagcagc
1561 ctttccaagc ttcttttcag gcacaaaatg aaccacttac acagaagccg catcagcagg
1621 aaatggaagt agaacaacct tgtattcaag aggttaagcg acatatgtct gataacagaa
1681 agtcaagatc taggtcagca tccaggtcac caaaaaggag gcgatctaga tctggttcta
1741 gatctcgaag gtctcggcat cgacgttctc gatctcggtc cagggataga cgccgacatt
1801 ctccccgatc tcgatctcaa gaaagacggg atcgagaaaa agagagagaa cgtcgacaaa
1861 aaggcctccc tcaagtgaaa ccggaaactg caagtgtttg cagtactacc ctctgggtgg
1921 ggcagctgga caaaagaact actcagcagg atgttgccag tctcttggaa gagtttggtc
1981 caattgaatc aattaatatg attcctccca ggggttgtgc ctatattgtt atggttcata
2041 ggcaagatgc ctatcgtgcc ctgcagaaac tgagccgagg aaactataaa gtgaaccaga
2101 aatccataaa gattgcctgg gccttaaaca aaggaataaa ggcagattat aagcagtatt
2161 gggatgtaga acttggtgtt acttatattc catgggacaa agtcaagcct gaggaactgg
2221 agagtttttg tgaaggagga atgttggaca gtgacacact taacccagat tggaaaggaa
2281 ttcctaagaa gcctgaaaat gaagttgctc aaaatggagg tgctgaaacc tcacacacag
2341 aaccagtatc acccatacct aaaccattac ctgtgcctgt ccctcctatt cctgttcctg
2401 cacctataac agtgccacct ccacaggtcc caccacatca accgggtcca cctgtagttg
2461 gtgctctcca gccgcctgct ttcacgcctc ctctgggaat accgcctcca ggctttggtc
2521 ctggtgttcc tcctccccct cctcctccac catttttgcg cccaggattc aacccaatgc
2581 atttaccacc aggttttctg cctcctggac ccccacctcc tataactcca ccagtatcca
2641 ttcctcctcc tcacactcca ccaataagca tcccaaactc tactatcgct ggtataaatg
2701 aagacactac aaaagactta tctattggaa atcccattcc aacagtggtg tctggggcta
2761 gaggaaacgc cgagtctggt gacagcgtga aaatgtatgg ctctgccgtg ccacctgctg
2821 cacccacgaa tctgcccacc cctcctgtaa cccagcctgt ttcacttctt ggcactcaag
2881 gagttgcccc tggtcctgta attggacttc aggcaccatc tactggtctt cttggcgccc
2941 ggcccggtct catcccactc cagcgccctc caggaatgcc cccacctcac ttacagcggt
3001 tccctttgat gccgccccgt cccatgccac cgcacatgat gcacagaggc ccaccgccag
3061 gaccaggggg ctttgcgatg cctccacctc atggaatgaa aggtcccttc ccaccgcatg
3121 gcccctttgt caggcctggt ggaatgccag ggctcggggg cccagggcca ggcccagggg
3181 gtcctgaaga cagagacgga aggcaacagc cgccgcagca gccacagcag cagccacagc
3241 cgcaggcgcc ccagcaacca cagcagcagc agcagcagcc accaccatca caacagcctc
3301 caccaacaca gcagcagcca cagcagttta gaaatgataa caggcagcag ttcaattcag
3361 gtagagacca agaaaggttt ggaagaagat cttttggaaa tagggtggaa aatgaccggg
3421 aacggtatgg gaaccgtaat gatgatagag ataatagtaa ccgtgacagg agagagtggg
3481 gaaggaggag ccctgaccgg gacaggcaca gagacttgga agagagaaat agacgctcta
3541 gtgggcatcg agacagagag agagattcta gagatagaga gtctcgtaga gagaaggaag
3601 aagcccgagg aaaggaaaag cctgaggtga cagacagggc aggtggtaac aaaaccgttg
3661 aacctcccat tagccaagtg ggaaatgtag acactgcttc agaacttgag aagggggtgt
3721 ctgaggctgc agtcctaaag ccttctgaag agttacctgc tgaggctacc tcatccgttg
3781 aacccgaaaa ggattctggc tcagcagcag aggctcctcg ttagagactg gaatttgtga
3841 aaatgtgaca gtgacacttc ctggagtgta gagcttgagg tgtacagatg ctgtattata
3901 tccgctcccg ctgtactgca gccccgcgcc agctggtggg gaactgtaag caatttgatt
3961 gcttcccttc tatttaaaaa tagccacaaa ataacaaaaa atactgaaaa tatgaataaa
4021 tattaccctt tttgctgtaa ctttttaaaa gttttgactt taaaaagttt acaaatcgta
4081 attagaagtg ctctctattt tttttttttt ttaatttaag acaaggtaac ggtgaaagct
4141 cctcaaaaca atagggatgt ttttaataaa ctctattttc gtaaaaaaaa aaaaaaa
//