LOCUS BC043343 3083 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nucleoporin 107kDa, mRNA (cDNA clone MGC:49877
IMAGE:5785959), complete cds.
ACCESSION BC043343
VERSION BC043343.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3083)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3083)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC043343.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: k Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56788371.
FEATURES Location/Qualifiers
source 1..3083
/db_xref="H-InvDB:HIT000052794"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:49877 IMAGE:5785959"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3083
/gene="NUP107"
/gene_synonym="NUP84"
/db_xref="GeneID:57122"
/db_xref="HGNC:HGNC:29914"
/db_xref="MIM:607617"
CDS 41..2818
/gene="NUP107"
/gene_synonym="NUP84"
/codon_start=1
/product="nucleoporin 107kDa"
/protein_id="AAH43343.1"
/db_xref="GeneID:57122"
/db_xref="HGNC:HGNC:29914"
/db_xref="MIM:607617"
/translation="MDRSGFGEISSPVIREAEVTRTARKQSAQKRVLLQASQDENFGN
TTPRNQVIPRTPSSFRQPFTPTSRSLLRQPDISCILGTGGKSPRLTQSSGFFGNLSMV
TNLDDSNWAAAFSSQRSGLFTNTEPHSITEDVTISAVMLREDDPGEAASMSMFSDFLQ
SFLKHSSSTVFDLVEEYENICGSQVNILSKIVSRATPGLQKFSKTASMLWLLQQEMVT
WRLLASLYRDRIQSALEEESVFAVTAVNASEKTVVEALFQRDSLVRQSQLVVDWLESI
AKDEIGEFSDNIEFYAKSVYWENTLHTLKQRQLTSYVGSVRPLVTELDPDAPIRQKMP
LDDLDREDEVRLLKYLFTLIRAGMTEEAQRLCKRCGQAWRAATLEGWKLYHDPNVNGG
TELEPVEGNPYRRIWKISCWRMAEDELFNRYERAIYAALSGNLKQLLPVCDTWEDTVW
AYFRVMVDSLVEQEIQTSVATLDETEELPREYLGANWTLEKVFEELQATDKKRVLEEN
QEHYHIVQKFLILGDIDGLMDEFSKWLSKSRNNLPGHLLRFMTHLILFFRTLGLQTKE
EVSIEVLKTYIQLLIREKHTNLIAFYTCHLPQDLAVAQYALFLESVTEFEQRHHCLEL
AKEADLDVATITKTVVENIRKKDNGEFSHHDLAPALDTGTTEEDRLKIDVIDWLVFDP
AQRAEALKQGNAIMRKFLASKKHEAAKEVFVKIPQDSIAEIYNQCEEQGMESPLPAED
DNAIREHLCIRAYLEAHETFNEWFKHMNSVPQKPALIPQPTFTEKVAHEHKEKKYEMD
FGIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDAKEDHERTHRMVLLRKLCLPM
LCFLLHTILHSTGQYQECLQLADMVSSERHKLYLVFSKEELRKLLQKLRESSLMLLDQ
GLDPLGYEIQL"
BASE COUNT 985 a 542 c 688 g 868 t
ORIGIN
1 ctgcagccaa ctttggttgt gtgtggaaaa ggctttagcc atggacagga gtggctttgg
61 agagatatca tcccctgtaa tccgggaggc agaggtgaca cggactgcac gaaaacagag
121 tgctcagaaa agagttttac ttcaggcatc tcaagatgaa aattttggta atactacacc
181 aagaaaccag gttatccctc gaactcctag ctcatttcga cagcctttta ccccaacaag
241 ccgaagctta ctaaggcagc cagatatttc ctgcattctt ggaacaggag ggaagtcgcc
301 ccgacttacg cagtcttcag ggttctttgg aaatctctcc atggttacta atctggatga
361 cagtaactgg gcagctgcat tttcatcaca gcgttccggg ctgttcacaa acacagagcc
421 ccacagtata acagaagatg taactatcag tgctgttatg ttacgtgagg atgatcctgg
481 agaagctgca tccatgagta tgttttctga tttcctgcag tcttttctga agcactcttc
541 gagtacagtt tttgatcttg tggaagagta tgaaaacatc tgtggtagtc aggtgaatat
601 actgagtaaa atagtgagtc gagcaacacc tggacttcaa aaattttcaa aaacagccag
661 tatgctctgg cttcttcaac aggagatggt cacatggagg ctgctggctt ctttgtatag
721 agacagaata cagtctgcat tagaagagga aagtgtattc gcagttactg ctgttaatgc
781 cagtgaaaaa acagttgtgg aagcgttatt tcagagggat tcacttgttc gacaaagtca
841 gctggtggta gattggttag agagtattgc caaagatgaa attggagaat tttctgataa
901 tattgagttt tatgcaaaat cagtatattg ggaaaatact ctgcatacct taaaacaacg
961 gcagctgact tcttacgttg gaagtgttcg tccgcttgtc actgaattgg accctgatgc
1021 tcccataaga cagaaaatgc cccttgatga tctggataga gaagatgaag ttagattact
1081 caaatatctc tttactctaa tccgtgctgg aatgacagaa gaggcacaac gactctgtaa
1141 acgctgtggt caagcatgga gagctgcaac acttgaaggc tggaaactgt accatgaccc
1201 taatgttaat ggaggaacag aattagaacc tgttgaaggg aatccatata gacgcatttg
1261 gaaaataagt tgctggagaa tggcagaaga tgagcttttt aatagatacg agagagcaat
1321 ttatgcagct ttaagtggga atcttaagca gctgcttcct gtctgtgaca cctgggaaga
1381 cacagtttgg gcctacttcc gggtgatggt ggacagtctg gtagaacaag agatccagac
1441 atcagtagca actctggatg aaactgaaga actccctaga gaatatctgg gagcaaactg
1501 gacgttagaa aaggtttttg aggaacttca agctactgac aaaaagagag ttctggaaga
1561 gaatcaagaa cattatcata tagttcaaaa gtttcttatc ctgggagaca ttgatggttt
1621 gatggatgag tttagcaaat ggctttccaa aagcagaaac aatctacctg gacacctgct
1681 tcgctttatg actcacctta ttttgttttt ccgtactctg ggactacaga ccaaggagga
1741 agtttctatt gaagttttaa agacatacat acagctttta ataagagaga aacatacaaa
1801 tcttatagca ttttatacct gtcatttgcc tcaagaccta gctgttgccc agtatgcatt
1861 atttttggaa agtgttacag aatttgaaca gcgccaccat tgcctggagt tggctaaaga
1921 agcagatttg gatgttgcaa caataacaaa aactgtagtt gagaatattc gaaagaaaga
1981 taatggtgaa tttagtcatc atgacctggc cccagcccta gatactggca ctactgagga
2041 ggatcgttta aaaattgatg taattgactg gttggtattt gacccagcgc agagggcaga
2101 agcactgaaa caaggcaatg caattatgag aaaattcttg gcatcaaaaa agcacgaagc
2161 tgcaaaagaa gtatttgtga aaattcctca ggattctata gcagaaatct ataatcagtg
2221 cgaggaacaa ggaatggaaa gtccacttcc tgctgaagat gataatgcta tccgagaaca
2281 tttgtgcatc agagcttatt tggaagccca tgaaaccttt aatgagtggt ttaagcatat
2341 gaattcagtt ccacaaaaac ctgctttgat acctcaacca acttttactg agaaagtggc
2401 tcatgaacac aaagaaaaga aatatgaaat ggattttggt atttggaaag ggcatttgga
2461 tgccctaact gctgatgtga aggagaaaat gtataacgtc ttgttgtttg ttgatggagg
2521 gtggatggtg gatgttagag aggatgccaa agaagaccat gaaagaacac atcgaatggt
2581 cttactgaga aagctttgtc tgccaatgtt gtgttttctg cttcatacga tattgcacag
2641 tactggtcag tatcaggaat gcctacagtt agcagatatg gtatcctctg agcgccacaa
2701 actgtacctg gtattttcta aggaagagct aaggaagttg ctgcagaagc tcagagagtc
2761 ctctctaatg ctcctagacc agggacttga cccattaggg tatgaaattc agttatagtt
2821 taatctttgt aatctcacta attttcatga taaatgaagt ttttaataaa atatacttgt
2881 tattagtaat tttttctttt gcattaccat gtaaaattta gacatttgaa ttttgtactt
2941 ttcagaatat tatcgtgaca ctttcaacat gtagggatat cagcgtttct ctgtgtgctt
3001 gttaataaaa ctatataaaa attaaaattt tctgttttta caaattccaa aaaaaaaaaa
3061 aaaaaaaaaa aaaaaaaaaa aaa
//