LOCUS BC043295 2878 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens zinc finger protein 398, mRNA (cDNA clone MGC:44469
IMAGE:5298104), complete cds.
ACCESSION BC043295
VERSION BC043295.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2878)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2878)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC043295.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: p Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777703.
FEATURES Location/Qualifiers
source 1..2878
/db_xref="H-InvDB:HIT000052792"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44469 IMAGE:5298104"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2878
/gene="ZNF398"
/gene_synonym="KIAA1339"
/gene_synonym="P51"
/gene_synonym="P71"
/gene_synonym="ZER6"
/db_xref="GeneID:57541"
/db_xref="HGNC:HGNC:18373"
CDS 268..2196
/gene="ZNF398"
/gene_synonym="KIAA1339"
/gene_synonym="P51"
/gene_synonym="P71"
/gene_synonym="ZER6"
/codon_start=1
/product="zinc finger protein 398"
/protein_id="AAH43295.1"
/db_xref="GeneID:57541"
/db_xref="HGNC:HGNC:18373"
/translation="MAEAAPAPTSEWDSECLTSLQPLPLPTPPAANEAHLQTAAISLW
TVVAAVQAIERKVEIHSRRLLHLEGRTGTAEKKLASCEKTVTELGNQLEGKWAVLGTL
LQEYGLLQRRLENLENLLRNRNFWILRLPPGIKGDIPKVPVAFDDVSIYFSTPEWEKL
EEWQKELYKNIMKGNYESLISMDYAINQPDVLSQIQPEGEHNTEDQAGPEESEIPTDP
SEEPGISTSDILSWIKQEEEPQVGAPPESKESDVYKSTYADEELVIKAEGLARSSLCP
EVPVPFSSPPAAAKDAFSDVAFKSQQSTSMTPFGRPATDLPEASEGQVTFTQLGSYPL
PPPVGEQVFSCHHCGKNLSQDMLLTHQCSHATEHPLPCAQCPKHFTPQADLSSTSQDH
ASETPPTCPHCARTFTHPSRLTYHLRVHNSTERPFPCPDCPKRFADQARLTSHRRAHA
SERPFRCAQCGRSFSLKISLLLHQRGHAQERPFSCPQCGIDFNGHSALIRHQMIHTGE
RPYPCTDCSKSFMRKEHLLNHRRLHTGERPFSCPHCGKSFIRKHHLMKHQRIHTGERP
YPCSYCGRSFRYKQTLKDHLRSGHNGGCGGDSDPSGQPPNPPGPLITGLETSGLGVNT
EGLETNQWYGEGSGGGVL"
BASE COUNT 727 a 814 c 732 g 605 t
ORIGIN
1 agctgagggg ccgctgcggg tggagtgcgg cggagtcggc ctcgcgaccc cagcttgatc
61 cgccgcctgc tgcaccgcgc ctccgccgcg ttcctgcgcg tcccgagccc cgacggccgc
121 gtgagtcccg tccgtgcggg gaaggcaggg ccgggtcggc gccgcctgtg gagaggaccc
181 ggcggccggg cctgcttgga gccgggcgcg gtggcagcgg cggcagcggc ggcgacttcc
241 gaggcccggg ctagacagcg cagggccatg gctgaggcgg ccccggcccc gacatctgaa
301 tgggactccg agtgccttac atccctgcag ccccttcctc ttcctacacc cccagcagca
361 aatgaggcac acctgcagac agcagctatc tctctgtgga cagtggtggc cgccgtgcag
421 gctatagaga ggaaggtgga gatccacagc cggcgactcc tacacctaga aggtcggaca
481 gggacagcag agaagaaact agccagctgt gaaaagacag ttaccgagct tgggaaccag
541 ctggagggca agtgggccgt gctgggaacc ctgctgcagg agtacgggct gctgcagagg
601 cggctggaga acttggagaa cctgctgcgc aacaggaact tctggatcct gcggctccct
661 ccaggtatta agggagatat cccaaaggtg cctgtggcat ttgatgatgt ctccatctac
721 ttttccactc cagagtggga aaaattagaa gaatggcaaa aggaacttta caagaatatc
781 atgaagggca actacgagtc tctcatctcc atggattatg ctataaatca acctgatgtc
841 ttatctcaga ttcaaccaga aggggaacat aatacagagg accaggcagg gccagaggaa
901 agtgagattc ccacagaccc cagtgaagag cctggtattt caacatcaga tattctgtct
961 tggattaaac aagaagaaga gcctcaggtt ggggccccac cggagtccaa ggagagtgac
1021 gtgtacaaaa gcacttatgc tgatgaagag cttgtcatca aagctgaagg ccttgctaga
1081 tcctcgttgt gccctgaggt tccagtccct ttctcttctc caccagcagc agcaaaggat
1141 gctttttcag atgtggcttt caaaagccag cagtctacat ccatgacacc ttttggacgt
1201 ccagccactg acctgcctga agcctctgag ggacaagtga cttttactca gttgggtagc
1261 tatcccctcc cacctccagt tggcgagcag gtgttctcat gccaccactg tggcaagaat
1321 ctcagccaag acatgttgct gacccaccaa tgtagccatg ctactgagca ccccttaccc
1381 tgtgcccagt gccctaagca ctttactcca caggcggacc tcagcagcac ctcccaggac
1441 catgccagcg agacaccccc cacctgccca cactgtgcca ggacttttac tcacccatca
1501 agacttacct accatcttcg ggtccataac agcactgagc gtcctttccc ctgtcctgat
1561 tgccccaagc gctttgctga ccaggctcga ctcaccagcc accggagagc tcatgcaagc
1621 gaaaggccct tccgctgtgc ccagtgcggc aggagcttca gcttgaaaat cagcctcctg
1681 ctccaccagc ggggtcatgc acaagagcgc cctttctcct gccctcagtg tggcattgac
1741 ttcaacggcc actcggccct gatccgccac cagatgatcc acacaggcga gcgtccttac
1801 ccctgcactg actgcagtaa gagcttcatg cgcaaggagc acctgctgaa ccaccggcgg
1861 ctgcacacag gcgagcggcc cttcagttgt cctcactgtg gcaagagctt catccgcaag
1921 caccacctaa tgaaacacca gcgcatccac accggggagc ggccctaccc ctgctcctac
1981 tgtggcagga gcttccgcta caaacagaca ctcaaggacc acctccgttc aggccacaat
2041 ggaggctgtg ggggtgatag tgacccatca ggtcagccac ccaacccacc aggtcccctc
2101 ataactgggc ttgaaacttc tggcctgggt gtcaacactg aaggtctaga gaccaaccag
2161 tggtatgggg aagggagtgg agggggagtt ttgtaaatcc aaatctctgt ggcttcatgc
2221 ttgtatatgc tcacagcagg gcacaaaatc caagagaagg tctgtgagcc cccatccaac
2281 acccacagta attattatct ggcacatcaa tgaatttggg gtcctataca cttgagacat
2341 gcttgtgttt tggaatttca cacccttaca agaataccac attttgaaac ccagaaagac
2401 ctggaaagga gcccagcatg tccatctttt caaagataca acaaaagcag aagttacaag
2461 aatattgcgg agaggttgga aagcaggatt taacctctag ttctcttgtt ctcagagaac
2521 agcaggttga tagtagatta tgtctctagg tagagacaga tacatgagaa gagcctccaa
2581 aactggaagc ccatcataag gcatgagaat gtttaactat aaagcctttt attagttctt
2641 tgatagctaa gatggttgtt ggagaaagtg cttaagccac tgtttatgtt gctgcctcct
2701 ctctcaaaac cagccaagat ctgttcacac acctctgtgg ctgtctttcc ctgaaacatg
2761 gtaactcaag actgcctgcc taggtttctt agattaatta ttcacataaa ttttgtttaa
2821 tattggttga acaagaaatc tgactttaaa agattaaaaa aaaaaaaaaa aaaaaaaa
//