LOCUS BC043273 4492 bp mRNA linear HUM 30-DEC-2006
DEFINITION Homo sapiens hydrocephalus inducing homolog (mouse), mRNA (cDNA
clone IMAGE:5297107), complete cds.
ACCESSION BC043273
VERSION BC043273.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4492)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4492)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC043273.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: n Column: 11
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..4492
/db_xref="H-InvDB:HIT000097592"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5297107"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4492
/gene="HYDIN"
/gene_synonym="DKFZp434D0513"
/gene_synonym="DKFZp434L0850"
/db_xref="GeneID:54768"
/db_xref="HGNC:HGNC:19368"
CDS 374..3670
/gene="HYDIN"
/gene_synonym="DKFZp434D0513"
/gene_synonym="DKFZp434L0850"
/codon_start=1
/product="HYDIN protein"
/protein_id="AAH43273.1"
/db_xref="GeneID:54768"
/db_xref="HGNC:HGNC:19368"
/translation="MFDVINSGRVQLEFSWVSEDTSKAVSFAKPDHQGSAQKDQLSQG
TMHTGSTLDSTMDHWAEGSPQPFSVEPSSGIVPVGKIQKFKVKFSPLDIGDFESNLFC
QIPNLPPGEQGPVLVAKGRNTLPICHFDLKDSDYISGHQRNPELRGSSGGALDPNTRV
IEFTTVGIGGKNLRTFTILNPTNSTYSFCWISEEIESLQNPAAFTCLTEKGFIHPEKK
AEIVFQFTPFHLGITESSWTFLIPEHNITVPFLLVGKTTEPLISLNKSHLNFSSLLIG
REARETVQIINKEEQGFDFSFQDNSRYSEGFSNSLLVCPMEGWIPPLSRFPIDIFFTP
KQEGDVNFNLICNVEKKVHPVTLNVKAEGYTMNVEIKCKDRTGSITLLTPNQTNIINF
YEVELNECVQCEFNFINTGKFTFSFQAQLCGSKTLLQYLEFSPIDSTVDVGQSVHATL
SFQPLKKCVLTDLELIIKISHGPTFMCNISGCAVSPAIHFSFTSYNFGTCFIYQAGMP
PYKQTLVITNKEETPMSIDCLYTNTTHLEVNSRVDVVKPGNTLEIPITFYPRESINYQ
ELIPFEINGLSQQTVEIKGKGTKMKILVLDPANRIVKLGAVLPGQVVKRTVSIMNNSL
AQLTFNQSILFTIPELQEPKVLTLAPFHNITLKPKEVCKLEVIFAPKKRVPPFSEEVF
MECMGLLRPLFLLSGCCQALEISLDQEHIPFGPVVYQTQATRRILMMNTGDVGARFKW
DIKKFEPHFSISPEEGYITSGMEVSFEVTYHPTEVGKESLCKNILCYIQGGSPLSLTL
SGVCVGPPAVKEVVNFTCQVRSKHTQTILLSNRTNQTWNLHTIFEGEHWEGPEFITLE
AHQQNKPYEITYRPRTMNLENRKHQGTLFFPLPDGTGWLYALHGTSELPKAVANIYRE
VPCKTPYTELLPITNWLNKPQRFRVIVEILKPEKPDLSITMKGLDYIDVLSGSKKDYK
LNFFSHKEGTYAAKVIFRNEVTNEFLYYNVSFRVIPSGIIKTIEMVTPVRQVASASIK
LENPLPYSVTFSTECRMPDIALPSQFVVPANSERWGLTASSRLECSGMIIAPCSLKLL
QSRPPPASAS"
BASE COUNT 1257 a 1202 c 1026 g 1007 t
ORIGIN
1 agtattagaa gaaaactacc aagaactgca gcttcaaatc agtgccaatg tggatttcgc
61 ttcataccat tgccaagcaa gagatgtgcg ctttaaggaa accttggttt accagacccg
121 agtgtttgac ataatgtcat gtgcatgaag caaaggggta tttaaagcag atcaagagag
181 tcaaggaagg cttcctggac aaggtagttc cccagctgaa ctttagagga cagataggag
241 gtaaccaagt aaagaagtga gaacaaagtg agagtgaaag aagtgagaat gggggtagcc
301 aagtgaagaa gcgagaatga agggctctct ctaggcagag agagcaacat gtgcaacaca
361 tacaaggaca aaaatgttcg atgtgattaa ttcaggacgt gtccagctgg aattcagctg
421 ggtctcagaa gatacctcaa aggcagtcag ctttgcaaaa ccagatcacc aaggttcagc
481 tcaaaaagat cagcttagtc agggcacgat gcatacaggc agcaccctgg acagcaccat
541 ggaccactgg gccgagggtt ccccacagcc cttctctgtg gagccctctt cgggaatcgt
601 gccggtgggg aagattcaga agttcaaagt aaaattctcc ccgttggaca ttggagactt
661 cgagagcaac cttttctgcc agattcccaa cctgccacct ggagagcaag gtccggtcct
721 ggtagcaaaa gggcggaaca ccttgcccat ctgccatttt gatctgaaag actcggacta
781 cataagtggc catcagcgca acccagagct ccgagggtcc agtgggggag ctctggatcc
841 aaacacccgg gtgattgagt tcaccactgt gggcatagga gggaagaatc tccggacctt
901 taccatccta aacccaacca atagcaccta ctccttctgc tggatctctg aagaaattga
961 aagtctccag aaccctgcag cattcacatg ccttacagaa aagggcttca tccaccctga
1021 aaagaaagcc gagatcgtgt tccagttcac acctttccat ctgggcatca ctgagtcatc
1081 atggaccttc ctaattcccg agcacaacat cacagtccct ttcctgctgg taggcaaaac
1141 taccgaacct ctcatctctc tgaacaagtc acacctcaac ttcagctctc tcctcattgg
1201 cagagaagcc agggagactg tgcagatcat taacaaggag gagcaggggt tcgatttttc
1261 cttccaggac aactcccgct attctgaagg tttcagcaac agcctgcttg tatgtcccat
1321 ggaaggctgg atcccaccac tgtccaggtt cccaattgat attttcttca caccaaagca
1381 ggaaggagat gtgaacttta atttgatctg caatgtggaa aagaaagtcc accctgtgac
1441 attaaatgtc aaggccgagg gctacactat gaatgtggag atcaagtgca aggacaggac
1501 aggctccatc actctgttga ctcccaacca gactaacatc atcaacttct atgaggtgga
1561 gttaaatgag tgtgtccagt gtgaattcaa ctttatcaac actggaaagt tcaccttcag
1621 cttccaggca cagctgtgtg gctccaaaac cttgctgcag tacttggaat tttcacccat
1681 cgacagcact gtggatgtag gacagagtgt acatgccacc ctgtcttttc aaccattaaa
1741 gaagtgtgtc ttgacagacc tggaactcat aatcaagatc agccatggtc caacatttat
1801 gtgcaacatc tcaggctgtg ctgtgagccc ggctatccat ttctccttca ccagctacaa
1861 ctttgggacc tgctttatct atcaagctgg gatgccccca tacaaacaaa ccctggtaat
1921 taccaacaag gaagaaacac ctatgagcat agattgtctg tacaccaaca ccactcacct
1981 cgaggtgaac tcccgtgttg atgtggtaaa gccaggaaac acattggaga ttccaataac
2041 tttttatcct cgagaaagta tcaactatca agaactcatt ccctttgaaa tcaatgggct
2101 ctcacaacaa acagtcgaaa tcaaagggaa gggtaccaaa atgaagattt tagtcctaga
2161 tccagccaac aggattgtga agttgggagc tgtcctacca gggcaggttg tgaaaagaac
2221 agtttccatc atgaacaaca gcctggccca gctcacattt aatcagtcca ttctgttcac
2281 aattccagaa ctccaggaac ccaaggtcct taccctggcg cccttccaca acatcacact
2341 gaagcccaaa gaagtctgta aactggaagt catctttgcc ccgaagaagc gtgtccctcc
2401 cttctctgag gaagtgttca tggaatgcat ggggctcctg cgccccctct tcctccttag
2461 cggctgctgc caggccctgg agatctcact ggaccaggaa catattccct ttggacccgt
2521 ggtgtatcag acgcaagcca cacgtcgcat cctcatgatg aacacaggcg atgtgggtgc
2581 aaggtttaaa tgggacatca aaaaatttga gcctcatttc tccattagcc cagaagaagg
2641 ctatattacc tcaggcatgg aggtttcttt tgaagtgacc taccatccca ccgaggtggg
2701 aaaggagagc ctttgtaaaa acattctctg ctacatccag ggaggcagtc ctctgagtct
2761 aaccctgtct ggagtctgcg tgggaccacc tgcggtaaaa gaggtagtga atttcacgtg
2821 ccaggtgcgc tccaagcaca cgcagaccat cctgctgtca aaccgcacca accagacctg
2881 gaatctgcac accatctttg agggcgagca ctgggagggg cctgagttca tcaccctgga
2941 ggcccaccag caaaacaagc cctatgagat cacctacagg ccccgcacca tgaacttgga
3001 gaaccgcaag caccagggca ccctcttctt ccccctccca gatgggaccg gctggctgta
3061 tgctctgcat gggacttctg agctccccaa agctgtagcc aatatctatc gtgaagtgcc
3121 atgtaagacc ccctacactg agcttctgcc aatcaccaac tggctgaaca agccccagag
3181 attccgggtc atcgtggaaa tactgaaacc agagaagccg gacctaagca tcactatgaa
3241 gggccttgat tacattgatg tactgtctgg ctctaagaaa gactacaagc tgaacttctt
3301 ttcccacaag gagggaacgt acgctgcaaa ggtgatcttc cgaaacgagg tgacaaatga
3361 gttcttgtac tacaatgtga gtttcagggt catcccttca ggcatcatca aaaccatcga
3421 gatggtgacc ccagtccggc aagttgcgtc agcctccatc aagttggaga accctctgcc
3481 ctactcggtg accttctcca cggaatgccg gatgcccgac atcgccctgc cctcccagtt
3541 tgtggtgcct gccaactccg agagatgggg tctcactgcg tcttccaggc tggagtgcag
3601 tggtatgatc atagctccct gcagccttaa actcctacaa tcaaggcctc ctcctgcctc
3661 agcctcctga gtagctagga ctacagggca cgttctcatt tgaatttcag cccctgaaag
3721 ctggagaaac cttcggaaga ctaactttgc acaacactga cttgggttac taccaatatg
3781 agctctatct gaaagccacg ccagcacttc cggaaaagcc tgttcacttc cagactgtcc
3841 ttggcagcag ccaaatcatc cttgtgaagt tcatcaatta cacacggcag aggacagaat
3901 actactgcag gaccgactgt acagacttcc acgcagaaaa actcattaat gcagccccag
3961 gaggccaggg aggcactgaa gccagtgtgg aagtcttatt cgagcccagc cacctgggtg
4021 agaccaaggg catcctgatc ctatcatcgc tcgcaggtgg agagtatatc atccccctct
4081 ttggaatggc tctgcctccc aagccccaag gtcccttctc gatccgagcc gggtacagca
4141 taatcatccc cttcaagaat gtcttctatc acatggtgac cttctccatc atcgtggata
4201 acccagcctt caccattcgc gctggagagt ctgtgcggcc caagaagatc aacaacatca
4261 cagtctcctt tgaaggaaac ccatctggca gcaaaacccc catcaccacc aagctgactg
4321 tgagctgccc tcctggtgaa gggagtgaga ctggagttaa atgggtttat tatctgaagg
4381 ggatcaccct ttagtggtaa ccagggttac ctgtatcaac caaaagctat gcattgtctt
4441 agcctgaaaa agaatagaga aaacaataag aattctaaaa aaaaaaaaaa aa
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