LOCUS BC043166 4096 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens potassium voltage-gated channel, shaker-related
subfamily, beta member 1, mRNA (cDNA clone MGC:44147
IMAGE:5286833), complete cds.
ACCESSION BC043166
VERSION BC043166.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4096)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4096)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC043166.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: b Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46255024.
FEATURES Location/Qualifiers
source 1..4096
/db_xref="H-InvDB:HIT000052781"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44147 IMAGE:5286833"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4096
/gene="KCNAB1"
/gene_synonym="AKR6A3"
/gene_synonym="hKvb3"
/gene_synonym="hKvBeta3"
/gene_synonym="KCNA1B"
/gene_synonym="KV-BETA-1"
/gene_synonym="Kvb1.3"
/db_xref="GeneID:7881"
/db_xref="HGNC:HGNC:6228"
/db_xref="MIM:601141"
CDS 872..2077
/gene="KCNAB1"
/gene_synonym="AKR6A3"
/gene_synonym="hKvb3"
/gene_synonym="hKvBeta3"
/gene_synonym="KCNA1B"
/gene_synonym="KV-BETA-1"
/gene_synonym="Kvb1.3"
/codon_start=1
/product="potassium voltage-gated channel, shaker-related
subfamily, beta member 1"
/protein_id="AAH43166.1"
/db_xref="GeneID:7881"
/db_xref="HGNC:HGNC:6228"
/db_xref="MIM:601141"
/translation="MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVA
IIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEV
AERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAE
TERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMY
WGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMT
WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLG
CTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNK
PYSKKDYRS"
BASE COUNT 1175 a 846 c 947 g 1128 t
ORIGIN
1 agttgcaact gttgtgctgc agcagatttg gtctgagtct gggcagagcc cctttttatg
61 gagcaaccct cccgatttgt tacagcaaga gcctggtgca agtgatcttt gccttcccat
121 cgcacacaaa ggcaaagagc tccttaaagg gacctgcctg ctcctccgtg cagctgcaaa
181 cccgtgtcgg tgcaggctca gcaacccagg ctttcgctcg agaatgagtg gggaggggtc
241 ttgaggagcc cccacgtcct ctcggagcgg aggcgggagg gagctgacag ccggagtgga
301 tggagaccac cagtccgagg ggacccgctt gcgattagct gcttcttggg atgctccgcg
361 cgccagttga gcatcctgcc tgtggtccag gggatgctgg cggcgcatct tgcggtaagc
421 ctgcgctgat ttgagccatc gcccagaagc gagcccgcat tcagacaccg cggaccggct
481 ccgcgaaggg ctgcgtgcag tcaccatgaa tgctcagctc taggcttctg taaaaacctc
541 caccactgca tggatttggc tgtttaatca gccgagatta cagcccggga agatttgcaa
601 acctgattct ccctccagct gctgtgacaa cttcggggcc gtctgtttac ttctctgggt
661 ccccggggac tctttcctgc atcgcagccc cttgtgccac tttgtgggct tggctcgaaa
721 gtcagccgcc aggactcctc tgacggcatc cccaggaagg gggagcaagg agggcttaaa
781 agaaaagcgg aaatccccgc aactgctcaa cctctcgtga ctgcctgtgt tctggggttc
841 tgagagggac cgtgcgctgc ctggggaagc aatgcaagtc tccatagcct gcacagagca
901 caatttgaag agtcggaatg gtgaggaccg acttctgagc aagcagagct ccaccgcccc
961 caatgtggta aacgcagccc gggccaaatt ccgcacggtc gctatcatcg cgcgcagcct
1021 ggggacgttc acgcctcagc atcacatttc tctcaaagag tccaccgcaa agcagactgg
1081 catgaaatat aggaatcttg gaaaatcagg actcagagtt tcttgcttgg gtcttggaac
1141 atgggtgaca tttggaggtc aaatttcaga tgaggttgct gaacggctga tgaccatcgc
1201 ctatgaaagt ggtgttaacc tctttgatac tgccgaagtc tatgctgctg gaaaggctga
1261 agtgattctg gggagcatca tcaagaagaa aggctggagg aggtccagtc tggtcataac
1321 aaccaaactc tactggggtg gaaaagctga aacagaaaga gggctgtcaa gaaagcatat
1381 tattgaagga ttgaagggct ccctccagag gctgcagctc gagtatgtgg atgtggtctt
1441 tgcaaatcga ccggacagta acactcccat ggaagaaatt gtccgagcca tgacacatgt
1501 gataaaccaa ggcatggcga tgtactgggg cacctcgaga tggagtgcta tggagatcat
1561 ggaagcctat tctgtagcaa gacagttcaa tatgatccca ccggtctgtg aacaagctga
1621 gtaccatctt ttccagagag agaaagtgga ggtccagctg ccagagctct accacaaaat
1681 aggtgttggc gcaatgacat ggtctccact tgcctgtgga atcatctcag gaaaatacgg
1741 aaacggggtg cctgaaagtt ccagggcttc actgaagtgc taccagtggt tgaaagaaag
1801 aattgtaagt gaagaaggga gaaaacagca aaacaagcta aaagaccttt ccccaattgc
1861 ggagcgtctg ggatgcacac tacctcagct agctgttgcg tggtgcctga gaaacgaagg
1921 tgtgagttct gtgctcctgg gatcatccac tcctgaacaa ctcattgaaa accttggtgc
1981 cattcaggtt ctcccaaaga tgacatcaca tgtggtaaat gagattgata acatactgcg
2041 caacaagccc tacagcaaga aggactatag atcataaggc aatgcatgaa ccacagaagc
2101 tgcatggtta aaatagcggc ctgtgcccag tacagaaagg tgttactaac cagtcttttg
2161 aatcacttag cagcttgctg ctcaacctct agtgtccctc cctggattct ttgaggtgtc
2221 tgctgtcgct accactgtgc acatctgaaa actcacaacc aagaaaatcc attctatttt
2281 cttatcttgg actggagtca cctattcttg cattgctgta tacacctcat gcttatgcaa
2341 tgggaagaat atgggggcca gggggtgtgg tactaccttc aggcatttgg taactcaaag
2401 aaggctgtac agatatattt tttcaaaaga acaaaatcca cagatgcaat gtgagttgcg
2461 taagaaacag agtagataga ctaaattcag tgaaggaaag gaattgagag atttttctta
2521 gtaaatagat tattgttaag taaatagtta ttaaaaatat atctcactgc aaaaaaaaag
2581 cagtatcttc actcaaaagt cttgcttgga agaataagca gaaagaattt tatatatttt
2641 ttttctattt tcacattcat actaacaagt tttgttccat ttgttattca ataaaacaaa
2701 aatttctagg tatttgcttt attacctttc aaatatttac tgttgcttgg ccccaagaat
2761 ggccttgtac aacttatcca gaatgtctat taggattcta atgttatgtc cacttacaag
2821 tagagacagt aaaaggatga atacccaatc tttagtgaca atgcagctga tttatgaaag
2881 agagggctac actgctatgg aaacttagct tcaaagaaaa tgcaatgtat ctgcaattag
2941 gtgttcattt tttactacat tttattaaaa cctgctttat actttcaact gcttgtaggc
3001 acaacttctg caagtttaaa tatttgagct ttacaaataa acatacacat gctcagtttt
3061 ttaagtaaac ctgtaaaata cccaggaagg caaatgttca ttgtttaatt agcactggga
3121 ttttataata taatgtttgg tatttttgag gcattgttaa catgaaagtc aaccactggc
3181 tttgtgaaaa atgctatgtc actattcaga atatgctggg taaattaact tgcctagtga
3241 aaagcaaaat gttaaagaaa gaacttctgg ttctataatc atattatatg cactaaacta
3301 tatgcatgaa agttctttgc atggattaat ggggcttacc cttgttgcac tagaaatctg
3361 aggtgtatct agccctgcca ctattggcta cttaccctca ttaatatccc acttgagaaa
3421 aattgtgaga ctatactgtg tcaatatctg taaaaagaga gaaaacatgt tttttttttt
3481 tttgaagggg gtggtgtggg agtggccctt taactctatt tggctatctg aggatgtaca
3541 aaattctcat ttaattttct ggtcagcaag ttccccacac agaaatcact ctgaggttta
3601 cagaagaact gtaatattat tttaaaatgc gattttctgt cattagttct agatatgtac
3661 ttcatggtta aattctaaat ctgaaaatgc tagtgggaga tatcaagaaa ttttcttttt
3721 gattactagt acctgtattc taacagagag tttgaatttt ttgcccgtgt tatcagaatg
3781 atggaaattg atcattttca gttgttcatt gtgtattcaa tccagcgaac tgctgtatgt
3841 atagaggagc tgaggtgctg tctaatggga aatgtgattt gattgattta tttgcttaga
3901 gtaataaaag cattttgtgc attcaatctt acaatagatt ttagctgatc tttcactgta
3961 aggcttatgt gtattttcca tatatgtaaa acatacacat gtaaaatata tgtggccata
4021 aattaggcaa taatcatcta aataaaaatt atattggcag ctaagctgca ctgaataccc
4081 aaaaaaaaaa aaaaaa
//