LOCUS BC043165 3169 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 5, mRNA (cDNA clone MGC:44144 IMAGE:5286818), complete
cds.
ACCESSION BC043165
VERSION BC043165.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3169)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3169)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 76 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542243.
FEATURES Location/Qualifiers
source 1..3169
/db_xref="H-InvDB:HIT000052780"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44144 IMAGE:5286818"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3169
/gene="LRFN5"
/gene_synonym="FLJ30803"
/db_xref="GeneID:145581"
/db_xref="HGNC:HGNC:20360"
CDS 624..2783
/gene="LRFN5"
/gene_synonym="FLJ30803"
/codon_start=1
/product="leucine rich repeat and fibronectin type III
domain containing 5"
/protein_id="AAH43165.1"
/db_xref="GeneID:145581"
/db_xref="HGNC:HGNC:20360"
/translation="MEKILFYLFLIGIAVKAQICPKRCVCQILSPNLATLCAKKGLLF
VPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLR
ALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLE
TIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQR
AQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPPLLTGRYFWS
IPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRS
LVYDNGTLDILITTVKDTGAFTCIASNPAGEATQIVDLHIIKLPHLLNSTNHIHEPDP
GSSDISTSTKSGSNTSSSNGDTKLSQDKIVVAEATSSTALLKFNFQRNIPGIRMFQIQ
YNGTYDDTLVYRMIPPTSKTFLVNNLAAGTMYDLCVLAIYDDGITSLTATRVVGCIQF
TTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKV
SNVYSQTNGAQIQGCSVTLPQSVSKQAVGHEENAQCCKATSDNVIQSSETCSSQDSST
TTSALPPSWTSSTSVSQKQKRKTGTKPSTEPQNEAVTNVESQNTNRNNSTALQLASRP
PDSVTEGPTSKRAHIKPNALLTNVDQIVQETQRLELI"
BASE COUNT 875 a 729 c 685 g 880 t
ORIGIN
1 agcggaatcg tgagaaggac cggttccctc cgtgctgctt cctccccgtg cagtgctggg
61 tgtgcgtgtg cgagtgtgag tgcaagtgcg cgcgcgcacg ggtgcgagtg tgtgtgagtg
121 tgagcgtgtg tctgtgtgtg cgtgcgcggc cgccctgcct ctgcccgctc cccgggcgcg
181 gagccgcggg tttcatgggg cgattgcagc gattccccca cccagagcga cctgcgggca
241 gcggcggcag tggcaggagc cgcctttccg attccctacg atgcgggtgc tgagctatgg
301 caaagggcag cgaagtgacg agcgagaccc gcgtacgact gtgaaagcca cctggagcca
361 ccttgccggg attgtacctg caggcagaaa gtcttcctac gaccgtcttt tcccttagag
421 gcaccagaat ccctgtaacc attcatccag gtgttgagaa gatatgtagc agccgagcac
481 ccatcttttg acaccgtcct ctgaaatcag ctttggagat gctttcactc tgtccgtctt
541 ctgcagcagc caggcagagt gccgactcct tcacagccgt gaggaactct tcaggctcca
601 gaagctctta aacctgatct acaatggaaa aaattctttt ttatctgttt ctcattggca
661 tagcagtgaa agctcagatc tgtccaaagc gttgtgtctg tcagattttg tctcctaatc
721 ttgcaaccct ttgtgccaag aaagggcttt tatttgttcc accaaacatt gacagaagaa
781 ctgtggaact gcggttggca gacaattttg ttacaaatat taaaaggaaa gattttgcca
841 atatgaccag cttggtggac ctgactctat ccaggaatac aataagtttt attacacctc
901 atgctttcgc tgacctacga aatttgaggg ctttgcattt gaatagcaac agattgacta
961 aaattacaaa tgatatgttc agtggtcttt ccaatcttca tcatttgata ctgaacaaca
1021 atcagctgac tttaatttcc tctacagcgt ttgatgatgt cttcgccctt gaggagctgg
1081 atctgtccta taataatcta gaaaccattc cttgggatgc tgttgagaag atggttagct
1141 tgcataccct tagtttggat cacaatatga ttgataacat tcctaagggg accttctccc
1201 atttgcacaa gatgactcgg ttagatgtga catcaaataa attgcagaag ctaccacctg
1261 accctctctt tcagcgagct caggtactag caacctcagg aatcataagc ccatctactt
1321 ttgcattaag ttttggtgga aacccattgc attgcaattg tgaattgttg tggttgaggc
1381 gtctgtccag agaagatgac ttagagacct gtgcttctcc tccactttta actggccgct
1441 acttttggtc aattcctgaa gaagagtttt tgtgtgagcc tcctctcatt actcgtcata
1501 cacatgagat gagagtcctg gagggacaaa gggcaacact gaggtgcaaa gccaggggag
1561 accctgagcc tgcaattcac tggatttctc ctgaagggaa gcttatttca aatgcaacaa
1621 gatctctggt gtatgataac ggaacacttg acattcttat cacaactgta aaggatacag
1681 gtgcttttac ctgcattgct tccaatcctg ctggggaagc aacacaaata gtggatcttc
1741 atataattaa gctccctcac ttactaaata gtacaaacca tatccatgag cctgatcctg
1801 gttcttcaga tatctcaact tctaccaagt caggttctaa tacaagcagt agtaatggtg
1861 atactaaatt gagtcaagat aaaattgtgg tggcagaagc tacatcatca acggcactac
1921 ttaaatttaa ttttcaaaga aatatccctg gaatacgtat gtttcaaatc cagtacaatg
1981 gtacttatga tgacaccctt gtttacagaa tgatacctcc tacgagcaaa acttttctgg
2041 tcaataatct ggctgctgga actatgtatg acttgtgtgt cttggccata tatgatgatg
2101 gcatcacttc cctcactgcc acaagagtcg tgggttgcat ccagtttact acggaacagg
2161 attatgtgcg ttgccatttc atgcagtccc agtttttggg aggcaccatg attattatta
2221 ttggtggaat cattgtagca tctgtgctgg tattcatcat tattctgatg atccggtata
2281 aggtttgcaa caataatggg caacacaagg tcaccaaggt tagcaatgtt tattcccaaa
2341 ctaacggggc tcaaatacaa ggctgtagtg taacgctgcc ccagtccgtg tccaaacaag
2401 ctgtgggaca cgaagagaat gcccagtgtt gtaaagctac cagtgacaat gtgattcaat
2461 cttcagaaac ttgttcgagt caggactcct ctaccactac ctctgctttg cctccttcct
2521 ggacttcaag cacttctgtg tcccaaaagc agaaaagaaa gactggcaca aagccaagta
2581 cagaaccaca gaatgaagcc gtcacaaatg ttgaatccca aaacactaac aggaacaact
2641 caactgcctt gcagttagct agccgtcctc ccgattctgt cacagagggg cccacgtcta
2701 aaagagcaca tataaagcca aatgctttgc tgactaatgt tgaccagatt gtccaggaaa
2761 cacagaggct ggagttaatc tgaagagcac cacttctcct ctctctcctg aaaaaatttg
2821 ccactgatat ttttactgga taaaattcaa aaatgtttca attcacaaag gctaattgtt
2881 gaactggtgt catagaagaa attgtctaca ggagccaagg tgaaagtctc tgatgacggc
2941 ggaactggct ccattagacc atggttcatc ctcttttaaa accaaatttt tttttcttct
3001 ggcctacaag tatttttttt ttaaaaaaga aaaaaagcct acattggcat caagttctgt
3061 atcaatccat cttacattgc catccatgat ttaacagact gtagaatctt gaataatcta
3121 tatcacttta acaaataaat gttttactat gacaaaaaaa aaaaaaaaa
//