LOCUS BC042944 2338 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens ephrin-B3, mRNA (cDNA clone MGC:41892 IMAGE:5286243), complete cds. ACCESSION BC042944 VERSION BC042944.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2338) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2338) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (09-JAN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC042944.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 76 Row: a Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38201712. FEATURES Location/Qualifiers source 1..2338 /db_xref="H-InvDB:HIT000052763" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:41892 IMAGE:5286243" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2338 /gene="EFNB3" /gene_synonym="EFL6" /gene_synonym="LERK8" /db_xref="GeneID:1949" /db_xref="HGNC:HGNC:3228" /db_xref="MIM:602297" CDS 398..1420 /gene="EFNB3" /gene_synonym="EFL6" /gene_synonym="LERK8" /codon_start=1 /product="ephrin-B3" /protein_id="AAH42944.1" /db_xref="GeneID:1949" /db_xref="HGNC:HGNC:3228" /db_xref="MIM:602297" /translation="MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQA EGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLL TCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRG MKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEG PLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLG LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPP NIYYKV" BASE COUNT 373 a 760 c 711 g 494 t ORIGIN 1 ggttttctcc cttagcccgc tgccctcaat cccagcgagg ctggggctcc ggctcggcgc 61 ccccttcctc gctccctggt ccggcgcccc atgccgcccc cgcccggtcc ccggctccac 121 cagtccccca cttaggcggg ctcacagatc ccggggtgct ggcgcgtggg ccgggggcgc 181 gtagggcgcc tgcagacggc ccctggaagg gctctggtgg ggctgagcgc tctgccgcgg 241 gggcgcgggc acagcaggaa gcaggtccgc gtgggcgctg ggggcatcag ctaccggggt 301 ggtccgggct gaagagccag gcagccaagg cagccacccc ggggggtggg cgactttggg 361 ggagttggtg ccccgccccc caggccttgg cggggtcatg gggccccccc attctgggcc 421 ggggggcgtg cgagtcgggg ccctgctgct gctgggggtt ttggggctgg tgtctgggct 481 cagcctggag cctgtctact ggaactcggc gaataagagg ttccaggcag agggtggtta 541 tgtgctgtac cctcagatcg gggaccggct agacctgctc tgccccaggg cccggcctcc 601 tggccctcac tcctctccta attatgagtt ctacaagctg tacctggtag ggggtgctca 661 gggccggcgc tgtgaggcac cccctgcccc aaacctcctt ctcacttgtg atcgcccaga 721 cctggatctc cgcttcacca tcaagttcca ggagtatagc cctaatctct ggggccacga 781 gttccgctcg caccacgatt actacatcat tgccacatcg gatgggaccc gggagggcct 841 ggagagcctg cagggaggtg tgtgcctaac cagaggcatg aaggtgcttc tccgagtggg 901 acaaagtccc cgaggagggg ctgtcccccg aaaacctgtg tctgaaatgc ccatggaaag 961 agaccgaggg gcagcccaca gcctggagcc tgggaaggag aacctgccag gtgaccccac 1021 cagcaatgca acctcccggg gtgctgaagg ccccctgccc cctcccagca tgcctgcagt 1081 ggctggggca gcaggggggc tggcgctgct cttgctgggc gtggcagggg ctgggggtgc 1141 catgtgttgg cggagacggc gggccaagcc ttcggagagt cgccaccctg gtcctggctc 1201 cttcgggagg ggagggtctc tgggcctggg gggtggaggt gggatgggac ctcgggaggc 1261 tgagcctggg gagctaggga tagctctgcg gggtggcggg gctgcagatc cccccttctg 1321 cccccactat gagaaggtga gtggtgacta tgggcatcct gtgtatatcg tgcaggatgg 1381 gcccccgcag agccctccaa acatctacta caaggtatga gggctcctct cacgtggcta 1441 tcctgaatcc agcccttctt ggggtgctcc tccagtttaa ttcctggttt gagggacacc 1501 tctaacatct cggccccctg tgccccccca gccccttcac tcctcccggc tgctgtcctc 1561 gtctccactt ttaggattcc ttaggattcc cactgcccca cttcctgccc tcccgtttgg 1621 ccatgggtgc ccccctctgt ctcagtgtcc ctggatcctt tttccttggg gaggggcaca 1681 ggctcagcct cctctctgac catgacccag gcatccttgt ccccctcacc cacccagagc 1741 taggggcggg aacagcccac cttttggttg gcaccgcctt ctttctgcct ctcactggtt 1801 ttctcttctc tatctcttat tctttccctc tcttccgtct ctaggtctgt tcttcttccc 1861 tagcatcctc ctccccacat ctcctttcac cctcttggct tcttatcctg tgcctctccc 1921 atctcctggg tgggggcatc aaagcatttc tccccttagc tttcagcccc ccttctgacc 1981 tctcatacca accactcccc tcagtctgcc aaaaatgggg gccttatggg gaaggctctg 2041 acactccacc ccagctcagg ccatgggcag cagggctcca ttctctggcc tggcccaggc 2101 ctctacatac ttactccagc catttggggt ggttgggtca tgacagctac catgagaaga 2161 agtgtcccgt tttgtccagt ggccaatagc aagatatgaa ccggtcggga catgtatgga 2221 cttggtctga tgccgaatgg gccacttggg accggaagtg actttctcca gacaagaggt 2281 gaccaggccc ggacagaaat ggcctgggaa gtagcagaag agaaaaaaaa aaaaaaaa //