LOCUS       BC042944                2338 bp    mRNA    linear   HUM 17-JUL-2006
DEFINITION  Homo sapiens ephrin-B3, mRNA (cDNA clone MGC:41892 IMAGE:5286243),
            complete cds.
ACCESSION   BC042944
VERSION     BC042944.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2338)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Aug 25, 2003 this sequence version replaced BC042944.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
            cDNA Library Preparation: Michael J. Brownstein (NHGRI) &  Shiraki
            Toshiyuki and Piero Carninci (RIKEN)
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 76 Row: a Column: 9
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 38201712.
FEATURES             Location/Qualifiers
     source          1..2338
                     /db_xref="H-InvDB:HIT000052763"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:41892 IMAGE:5286243"
                     /tissue_type="Brain, hypothalamus"
                     /clone_lib="NIH_MGC_96"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..2338
                     /gene="EFNB3"
                     /gene_synonym="EFL6"
                     /gene_synonym="LERK8"
                     /db_xref="GeneID:1949"
                     /db_xref="HGNC:HGNC:3228"
                     /db_xref="MIM:602297"
     CDS             398..1420
                     /gene="EFNB3"
                     /gene_synonym="EFL6"
                     /gene_synonym="LERK8"
                     /codon_start=1
                     /product="ephrin-B3"
                     /protein_id="AAH42944.1"
                     /db_xref="GeneID:1949"
                     /db_xref="HGNC:HGNC:3228"
                     /db_xref="MIM:602297"
                     /translation="MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQA
                     EGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLL
                     TCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRG
                     MKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTSNATSRGAEG
                     PLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLG
                     LGGGGGMGPREAEPGELGIALRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPP
                     NIYYKV"
BASE COUNT          373 a          760 c          711 g          494 t
ORIGIN      
        1 ggttttctcc cttagcccgc tgccctcaat cccagcgagg ctggggctcc ggctcggcgc
       61 ccccttcctc gctccctggt ccggcgcccc atgccgcccc cgcccggtcc ccggctccac
      121 cagtccccca cttaggcggg ctcacagatc ccggggtgct ggcgcgtggg ccgggggcgc
      181 gtagggcgcc tgcagacggc ccctggaagg gctctggtgg ggctgagcgc tctgccgcgg
      241 gggcgcgggc acagcaggaa gcaggtccgc gtgggcgctg ggggcatcag ctaccggggt
      301 ggtccgggct gaagagccag gcagccaagg cagccacccc ggggggtggg cgactttggg
      361 ggagttggtg ccccgccccc caggccttgg cggggtcatg gggccccccc attctgggcc
      421 ggggggcgtg cgagtcgggg ccctgctgct gctgggggtt ttggggctgg tgtctgggct
      481 cagcctggag cctgtctact ggaactcggc gaataagagg ttccaggcag agggtggtta
      541 tgtgctgtac cctcagatcg gggaccggct agacctgctc tgccccaggg cccggcctcc
      601 tggccctcac tcctctccta attatgagtt ctacaagctg tacctggtag ggggtgctca
      661 gggccggcgc tgtgaggcac cccctgcccc aaacctcctt ctcacttgtg atcgcccaga
      721 cctggatctc cgcttcacca tcaagttcca ggagtatagc cctaatctct ggggccacga
      781 gttccgctcg caccacgatt actacatcat tgccacatcg gatgggaccc gggagggcct
      841 ggagagcctg cagggaggtg tgtgcctaac cagaggcatg aaggtgcttc tccgagtggg
      901 acaaagtccc cgaggagggg ctgtcccccg aaaacctgtg tctgaaatgc ccatggaaag
      961 agaccgaggg gcagcccaca gcctggagcc tgggaaggag aacctgccag gtgaccccac
     1021 cagcaatgca acctcccggg gtgctgaagg ccccctgccc cctcccagca tgcctgcagt
     1081 ggctggggca gcaggggggc tggcgctgct cttgctgggc gtggcagggg ctgggggtgc
     1141 catgtgttgg cggagacggc gggccaagcc ttcggagagt cgccaccctg gtcctggctc
     1201 cttcgggagg ggagggtctc tgggcctggg gggtggaggt gggatgggac ctcgggaggc
     1261 tgagcctggg gagctaggga tagctctgcg gggtggcggg gctgcagatc cccccttctg
     1321 cccccactat gagaaggtga gtggtgacta tgggcatcct gtgtatatcg tgcaggatgg
     1381 gcccccgcag agccctccaa acatctacta caaggtatga gggctcctct cacgtggcta
     1441 tcctgaatcc agcccttctt ggggtgctcc tccagtttaa ttcctggttt gagggacacc
     1501 tctaacatct cggccccctg tgccccccca gccccttcac tcctcccggc tgctgtcctc
     1561 gtctccactt ttaggattcc ttaggattcc cactgcccca cttcctgccc tcccgtttgg
     1621 ccatgggtgc ccccctctgt ctcagtgtcc ctggatcctt tttccttggg gaggggcaca
     1681 ggctcagcct cctctctgac catgacccag gcatccttgt ccccctcacc cacccagagc
     1741 taggggcggg aacagcccac cttttggttg gcaccgcctt ctttctgcct ctcactggtt
     1801 ttctcttctc tatctcttat tctttccctc tcttccgtct ctaggtctgt tcttcttccc
     1861 tagcatcctc ctccccacat ctcctttcac cctcttggct tcttatcctg tgcctctccc
     1921 atctcctggg tgggggcatc aaagcatttc tccccttagc tttcagcccc ccttctgacc
     1981 tctcatacca accactcccc tcagtctgcc aaaaatgggg gccttatggg gaaggctctg
     2041 acactccacc ccagctcagg ccatgggcag cagggctcca ttctctggcc tggcccaggc
     2101 ctctacatac ttactccagc catttggggt ggttgggtca tgacagctac catgagaaga
     2161 agtgtcccgt tttgtccagt ggccaatagc aagatatgaa ccggtcggga catgtatgga
     2221 cttggtctga tgccgaatgg gccacttggg accggaagtg actttctcca gacaagaggt
     2281 gaccaggccc ggacagaaat ggcctgggaa gtagcagaag agaaaaaaaa aaaaaaaa
//