LOCUS BC042830 1131 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens oral-facial-digital syndrome 1, mRNA (cDNA clone
IMAGE:5302058), complete cds.
ACCESSION BC042830
VERSION BC042830.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1131)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1131)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: l Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4503178
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1131
/db_xref="H-InvDB:HIT000097365"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5302058"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1131
/gene="OFD1"
/gene_synonym="71-7A"
/gene_synonym="CX-ORF5"
/db_xref="GeneID:8481"
/db_xref="MIM:300170"
CDS 291..722
/gene="OFD1"
/gene_synonym="71-7A"
/gene_synonym="CX-ORF5"
/codon_start=1
/product="OFD1 protein"
/protein_id="AAH42830.1"
/db_xref="GeneID:8481"
/db_xref="MIM:300170"
/translation="MMAQSNMFTVADVLSQDELRKKLYKTFKDRGILDTLKTQLRNQL
IHELMHPVLSGELQPRSISVEGSSLLIGASNSLVADHLQRCGYEYSLSVFFPESGLAK
EKVFTMQDLLQLIKINPTSSLYKSLVSGSDKENQKAIKSVT"
BASE COUNT 339 a 240 c 268 g 284 t
ORIGIN
1 agtccctagt gtctgggtcc ccgccctcca gccgcctttg agtcgtgcct gggtcctcgc
61 ccttgcctca gaaccgcgaa gaaaggaagc tcgcgtgttt gctagaaaac ctagttggga
121 gtgcgaggca gagaacgttc agcacctttg ttcctcccga accctcggga cagaggcagg
181 gttctgaggg cagggattcc ccctcgtctt ggccccaccg cccgggctgg gcactaaact
241 cgggccgcgg cggggcgagc gaggcgggct cgggagggag ctgacgcctg atgatggcgc
301 agtccaacat gtttaccgtg gctgatgtgt tgagtcaaga tgaactgcgc aaaaagctat
361 acaagacgtt taaggatcgg ggtatactgg atacactcaa gacacaactt cgaaaccagc
421 taattcatga gttgatgcac cctgtattga gtggagaact gcagcctcgg tccatttcag
481 tagaagggag ctccctctta ataggcgcct ctaactcttt agtggcagat cacttacaaa
541 gatgtggcta tgaatattca ctttctgttt tctttccaga aagtggtttg gcaaaagaaa
601 aggtatttac tatgcaggat ctattacaac tcattaaaat caaccctact tccagtctct
661 acaaatcact ggtttcagga tctgataaag aaaatcaaaa agccattaag tctgtgactt
721 aatcgccaag tctcttggta gtaatgttag cagaatataa ataaattgga gcacaagata
781 ttctggactg cccgcaaact agaccatctc tactgaagtt cagtatggtt ttcttatgca
841 ttttttaaaa gaattggcag aatatcatca agctaaagag agttgtaata tggaaactca
901 gacaagttcg acatttaaca gagattctct ggctgagaag cttcagctta ttgatgatca
961 gtttgcagat gcttaccctc agcgtatcaa gttcgaatct ttagaaataa agctaaatga
1021 gtataagaga gaaatagaag agcaacttcg ggcagaaatg tgtcaaaagt tgaagttttt
1081 taaagatacc gagatagcaa aaattaaaat ggaagcaaaa aaaaaaaaaa a
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