LOCUS BC042634 4293 bp mRNA linear HUM 09-MAR-2007
DEFINITION Homo sapiens protocadherin 12, mRNA (cDNA clone MGC:34069
IMAGE:5177606), complete cds.
ACCESSION BC042634
VERSION BC042634.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4293)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4293)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: o Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14589925.
FEATURES Location/Qualifiers
source 1..4293
/db_xref="H-InvDB:HIT000052730"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34069 IMAGE:5177606"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4293
/gene="PCDH12"
/gene_synonym="VE-cadherin-2"
/gene_synonym="VECAD2"
/db_xref="GeneID:51294"
/db_xref="HGNC:HGNC:8657"
/db_xref="MIM:605622"
CDS 262..3825
/gene="PCDH12"
/gene_synonym="VE-cadherin-2"
/gene_synonym="VECAD2"
/codon_start=1
/product="PCDH12 protein"
/protein_id="AAH42634.1"
/db_xref="GeneID:51294"
/db_xref="HGNC:HGNC:8657"
/db_xref="MIM:605622"
/translation="MMQLLQLLLGLLGPGGYLFLLGDCQEVTTLTVKYQVSEEVPSGT
VIGKLSQELGREERRRQAGAAFQVLQLPQALPIQVDSEEGLLSTGRRLDREQLCRQWD
PCLVSFDVLATGDLALIHVEIQVLDINDHQPRFPKGEQELEISESASLRTRIPLDRAL
DPDTGPNTLHTYTLSPSEHFALDVIVGPDETKHAELIVVKELDREIHSFFDLVLTAYD
NGNPPKSGTSLVKVNVLDSNDNSPAFAESSLALEIQEDAAPGTLLIKLTATDPDQGPN
GEVEFFLSKHMPPEVLDTFSIDAKTGQVILRRPLDYEKNPAYEVDVQARDLGPNPIPA
HCKVLIKVLDVNDNIPSIHVTWASQPSLVSEALPKDSFIALVMADDLDSGNNGLVHCW
LSQELGHFRLKRTNGNTYMLLTNATLDREQWPKYTLTLLAQDQGLQPLSAKKQLSIQI
SDINDNAPVFEKSRYEVSTRENNLPSLHLITIKAHDADLGINGKVSYRIQDSPVAHLV
AIDSNTGEVTAQRSLNYEEMAGFEFQVIAEDSGQPMLASSVSVWVSLLDANDNAPEVV
QPVLSDGKASLSVLVNASTGHLLVPIETPNGLGPAGTDTPPLATHSSRPFLLTTIVAR
DADSGANGEPLYSIRSGNEAHLFILNPHTGQLFVNVTNASSLIGSEWELEIVVEDQGS
PPLQTRALLRVMFVTSVDHLRDSARKPGALSMSMLTVICLAVLLGIFGLILALFMSIC
RTEKKDNRAYNCREAESAYRQQPKRPQKHIQKADIHLVPVLRGQAGEPCEVGQSHKDV
DKEAMMEAGWDPCLQAPFHLTPTLYRTLRNQGNQGAPAESREVLQDTVNLLFNHPRQR
NASRENLNLPEPQPATGQPRSRPLKVAGSPTGRLAGDQGSEEAPQRPPASSATLRRQR
HLNGKVSPEKESGPRQILRSLVRLSVAAFAERNPVEELTVDSPPVQQISQLLSLLHQG
QFQPKPNHRGNKYLAKPGGSRSAIPDTDGPSARAGGQTDPEQEEGPLDPEEDLSVKQL
LEEELSSLLDPSTGLALDRLSAPDPAWMARLSLPLTTNYRDNVISPDAAATEEPRTFQ
TFGKAEAPELSPTGTRLASTFVSEMSSLLEMLLEQRSSMPVEAASEALRRLSVCGRTL
SLDLATSAASGMKVQGDPGGKTGTEGKSRGSSSSSSSSRCL"
BASE COUNT 1064 a 1202 c 1195 g 832 t
ORIGIN
1 ggaccaacta gttccccagt agggggtctc ccctggcaat tcttgatcgg cgtttggaca
61 tctcagatcg cttccaatga agatggcctt gccttggggt cctgcttgtt tcataatcat
121 ctaactatgg gacaaggttg tgccggcagc tctgggggaa ggagcacggg gctgatcaag
181 ccatccagga aacactggag gacttgtcca gccttgaaag aactctagtg gtttctgaat
241 ctagcccact tggcggtaag catgatgcaa cttctgcaac ttctgctggg gcttttgggg
301 ccaggtggct acttatttct tttaggggat tgtcaggagg tgaccactct cacggtgaaa
361 taccaagtgt cagaggaagt gccatctggt acagtgatcg ggaagctgtc ccaggaactg
421 ggccgggagg agaggcggag gcaagctggg gccgccttcc aggtgttgca gctgcctcag
481 gcgctcccca ttcaggtgga ctctgaggaa ggcttgctca gcacaggcag gcggctggat
541 cgagagcagc tatgccgaca gtgggatccc tgcctggttt cctttgatgt gcttgccaca
601 ggggatttgg ctctgatcca tgtggagatc caagtgctgg acatcaatga ccaccagcca
661 cggtttccca aaggcgagca ggagctggaa atctctgaga gcgcctctct gcgaacccgg
721 atccccctgg acagagctct tgacccagac acaggcccta acaccctgca cacctacact
781 ctgtctccca gtgagcactt tgccttggat gtcattgtgg gccctgatga gaccaaacat
841 gcagaactca tagtggtgaa ggagctggac agggaaatcc attcattttt tgatctggtg
901 ttaactgcct atgacaatgg gaaccccccc aagtcaggta ccagcttggt caaggtcaac
961 gtcttggact ccaatgacaa tagccctgcg tttgctgaga gttcactggc actggaaatc
1021 caagaagatg ctgcacctgg tacgcttctc ataaaactga ccgccacaga ccctgaccaa
1081 ggccccaatg gggaggtgga gttcttcctc agtaagcaca tgcctccaga ggtgctggac
1141 accttcagta ttgatgccaa gacaggccag gtcattctgc gtcgacctct agactatgaa
1201 aagaaccctg cctacgaggt ggatgttcag gcaagggacc tgggtcccaa tcctatccca
1261 gcccattgca aagttctcat caaggttctg gatgtcaatg acaacatccc aagcatccac
1321 gtcacatggg cctcccagcc atcactggtg tcagaagctc ttcccaagga cagttttatt
1381 gctcttgtca tggcagatga cttggattca ggaaacaatg gtttggtcca ctgctggctg
1441 agccaagagc tgggccactt caggctgaaa agaactaatg gcaacacata catgttgcta
1501 accaatgcca cactggacag agagcagtgg cccaaatata ccctcactct gttagcccaa
1561 gaccaaggac tccagccctt atcagccaag aaacagctca gcattcagat cagtgacatc
1621 aacgacaatg cacctgtgtt tgagaaaagc aggtatgaag tctccacgcg ggaaaacaac
1681 ttaccctctc ttcacctcat taccatcaag gctcatgatg cagacttggg cattaatgga
1741 aaagtctcat accgcatcca ggactcccca gttgctcact tagtagctat tgactccaac
1801 acaggagagg tcactgctca gaggtcactg aactatgaag agatggccgg ctttgagttc
1861 caggtgatcg cagaggacag cgggcaaccc atgcttgcat ccagtgtctc tgtgtgggtc
1921 agcctcttgg atgccaatga taatgcccca gaggtggtcc agcctgtgct cagcgatgga
1981 aaagccagcc tctccgtgct tgtgaatgcc tccacaggcc acctgctggt gcccatcgag
2041 actcccaatg gcttgggccc agcgggcact gacacacctc cactggccac tcacagctcc
2101 cggccattcc ttttgacaac cattgtggca agagatgcag actcgggggc aaatggagag
2161 cccctctaca gcatccgcag tggaaatgaa gcccacctct tcatcctcaa ccctcatacg
2221 gggcagctgt tcgtcaatgt caccaatgcc agcagcctca ttgggagtga gtgggagctg
2281 gagatagtag tagaggacca gggaagcccc cccttacaga cccgagccct gttgagggtc
2341 atgtttgtca ccagtgtgga ccacctgagg gactcagccc gcaagcctgg ggctttgagc
2401 atgtcgatgc tgacggtgat ctgcctggct gtactgctgg gcatcttcgg gttgatcctg
2461 gctttgttca tgtccatctg ccggacagaa aagaaggaca acagggccta caactgtcgg
2521 gaggccgagt ccgcctaccg ccagcagccc aagaggcccc agaaacacat tcagaaggca
2581 gacatccacc tcgtgcctgt gctcaggggt caggcaggtg agccttgtga agtcgggcag
2641 tcccacaaag atgtggacaa ggaggcgatg atggaagcag gctgggaccc ctgcctgcag
2701 gcccccttcc acctcacccc gaccctgtac aggacgctgc gtaatcaagg caaccaggga
2761 gcaccggcgg agagccgaga ggtgctgcaa gacacggtca acctcctttt caaccatccc
2821 aggcagagga atgcctcccg ggagaacctg aaccttcccg agccccagcc tgccacaggc
2881 cagccacgtt ccaggcctct gaaggttgca ggcagcccca cagggaggct ggctggagac
2941 cagggcagtg aggaagcccc acagaggcca ccagcctcct ctgcaaccct gagacggcag
3001 cgacatctca atggcaaagt gtcccctgag aaagaatcag ggccccgtca gatcctgcgg
3061 agcctggtcc ggctgtctgt ggctgccttc gccgagcgga accccgtgga ggagctcact
3121 gtggattctc ctcctgttca gcaaatctcc cagctgctgt ccttgctgca tcagggccaa
3181 ttccagccca aaccaaacca ccgaggaaat aagtacttgg ccaagccagg aggcagcagg
3241 agtgcaatcc cagacacaga tggcccaagt gcaagggctg gaggccagac agacccagaa
3301 caggaggaag ggcctttgga tcctgaagag gacctctctg tgaagcaact gctagaagaa
3361 gagctgtcaa gtctgctgga ccccagcaca ggtctggccc tggaccggct gagcgcccct
3421 gacccggcct ggatggcgag actctctttg cccctcacca ccaactaccg tgacaatgtg
3481 atctccccgg atgctgcagc cacggaggag ccgaggacct tccagacgtt cggcaaggca
3541 gaggcaccag agctgagccc aacaggcacg aggctggcca gcacctttgt ctcggagatg
3601 agctcactgc tggagatgct gctggaacag cgctccagca tgcccgtgga ggccgcctcc
3661 gaggcgctgc ggcggctctc ggtctgcggg aggaccctca gtttagactt ggccaccagt
3721 gcagcctcag gcatgaaagt gcaaggggac ccaggtggaa agacggggac tgagggcaag
3781 agcagaggca gcagcagcag cagcagcagc agcaggtgcc tgtgaacata cctcagacgc
3841 ctctggatcc aagaaccagg ggcctgagga tctgtggaca agagctggtt tctaaaatct
3901 tgtaactcac tagctagcgg cggcctgaga actttagggt gactgatgct acccccacag
3961 aggaggcaag agccccagga ctaacagctg actgaccaaa gcagcccctt gtaagcagct
4021 ctgagtcttt tggaggacag ggacggtttg tggctgagat aagtgtttcc tggcaaaaca
4081 tatgtggagc acaaagggtc agtcctctgg cagaacagat gccacggagt atcacaggca
4141 ggaaaggatg gccttcttgg gtagcaggag tcagggggct gtaccctggg ggtgccagga
4201 aatgctctct gacctatcaa taaaggaaaa gcagtgattc attaaaaaaa aaaaaaaaaa
4261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//